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Hi Jan,<br>
<br>
We haven't encountered this issue before.<br>
<br>
Ensembl stores the minified filenames in it's packed config file,
you can check these with:<br>
$ perl ensembl-webcode/conf/dump-packed.pl
ensembl-webcode/conf/config.packed ENSEMBL_JS_NAME<br>
$ perl ensembl-webcode/conf/dump-packed.pl
ensembl-webcode/conf/config.packed ENSEMBL_CSS_NAME<br>
<br>
What do you see?<br>
<br>
Have you tried manually clearing the minified files and restarting?<br>
To do this:<br>
$ rm ensembl-webcode/htdocs/minified/*<br>
$ eg-restart<br>
<br>
Could you also check that your VM isn't low on disk space:<br>
$ df -h<br>
<br>
Thanks,<br>
Nick<br>
<br>
<br>
<div class="moz-cite-prefix">On 21/05/2014 08:40,
<a class="moz-txt-link-abbreviated" href="mailto:Jan.Taubert@kws.com">Jan.Taubert@kws.com</a> wrote:<br>
</div>
<blockquote
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<div class="WordSection1">
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif"">Hi,<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">I am trying to setup a local EnsemblGenomes
mirror using the virtual machine image from 16.05.2014.
However, I am now experiencing a problem with loading the
minified CSS and JS files for the webpage after rebuilding
the config. The CSS and JS is generated correctly:<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">[eguser@ensembl minified]$ pwd<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">/ensembl/ensembl-genomes/release-22/ensembl-webcode/htdocs/minified<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">[eguser@ensembl minified]$ ll<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">total 1504<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">-rw-rw-r--. 1 eguser eguser 135881 May 21 08:02
5ec515962656e919612ba04fbe109094.css<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">-rw-rw-r--. 1 eguser eguser 110959 May 21 07:57
8fd260b6d3e136f0c37660917d81358f.js<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">-rw-rw-r--. 1 eguser eguser 563323 May 21 07:57
ad77343cf5657d5f0c9fa74094e26105.js<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">-rw-rw-r--. 1 eguser eguser 561602 May 21 08:02
d215318d4d1cebdf474400add5b8d9d9.js<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">-rw-rw-r--. 1 eguser eguser 151772 May 21 07:57
da7ddbd7793fce75243b054500b1d054.css<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">It can also be accessed via the webpage when
entering the URL directly:<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">[eguser@ensembl minified]$ curl
<a class="moz-txt-link-rfc2396E" href="http://10.10.70.129:8080/minified/5ec515962656e919612ba04fbe109094.css">"http://10.10.70.129:8080/minified/5ec515962656e919612ba04fbe109094.css"</a><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">body{font-family:Luxi
Sans,Helvetica,Arial,Geneva,sans-serif;font-size:80%;color:#555;background-color:#fff;padding:0;margin:0;border:0}body.ie6{font-size:85%}pre,code,kbd{font-family:Courier
New,Courier,monospace}div,span,p,li,dd,dt,th,td,pre,code,kbd{font-size:1em}body.ie6
th,body.ie6
td{font-size:13px}img{border:0}form{border:0;margin:0 0 1em
0}p{margin:0 0
1em;line-height:1.25em;padding:0}ul,ol{margin:0 0
1.25em;line-height:1.25em;padding-left:2em}pre{margin:0 0
1em}#min_width_container{position:relative;width:100%;min-width:775px}#min_width_holder{display:block}body.ie6
#min_width_container{border-right:775px solid #fff}body.ie6
#min_width_holder{display:inline-block;position:relative;margin-right:-775px}.hidden{display:none}.hide{display:none}.page{text-align:center;padding:.25em}.spinner{height:100px;display:block;border:16px
solid transparent;margin:0 0
16px;text-align:center;background:url(/i/e-loader.gif)
no-repeat bottom center}.pointer{cursor:pointer}body.ie6
.spinner{background-color:#fff;border-color:#fff;height:132px}.top-margin{margin-top:1em!important}.bottom-margin{margin-bottom:1em!important}.left-margin{margin-left:1em!important}.right-margin{margin-right:1em!important}…<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">However the CSS and JS links are not set
correctly in the HTML page:<o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span
style="font-size:10.0pt;font-family:Consolas;color:blue"
lang="EN-US"><</span><span
style="font-size:10.0pt;font-family:Consolas;color:#A31515"
lang="EN-US">title</span><span
style="font-size:10.0pt;font-family:Consolas;color:blue"
lang="EN-US">></span><span
style="font-size:10.0pt;font-family:Consolas" lang="EN-US">Ensembl
Plants<span style="color:blue"></</span><span
style="color:#A31515">title</span><span style="color:blue">></span><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span
style="font-size:10.0pt;font-family:Consolas" lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span
style="font-size:10.0pt;font-family:Consolas" lang="EN-US">
<span style="color:blue"><</span><span
style="color:#A31515">link</span> <span style="color:red">
rel</span><span style="color:blue">="stylesheet"</span> <span
style="color:red">type</span><span style="color:blue">="text/css"</span>
<span style="color:red">media</span><span style="color:blue">="all"</span>
<span style="color:red">
href</span><span style="color:blue">="/minified/.css"</span>
<span style="color:blue">
/></span><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span
style="font-size:10.0pt;font-family:Consolas" lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span
style="font-size:10.0pt;font-family:Consolas" lang="EN-US">
<span style="color:blue"><</span><span
style="color:#A31515">link</span> <span style="color:red">
rel</span><span style="color:blue">="icon"</span> <span
style="color:red">href</span><span style="color:blue">="/i/ensembl-favicon.png"</span>
<span style="color:red">type</span><span style="color:blue">="image/png"</span>
<span style="color:blue">
/></span><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">…<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span
style="font-size:10.0pt;font-family:Consolas;color:blue"
lang="EN-US"><</span><span
style="font-size:10.0pt;font-family:Consolas;color:#A31515"
lang="EN-US">script</span><span
style="font-size:10.0pt;font-family:Consolas" lang="EN-US">
<span style="color:red">type</span><span style="color:blue">="text/javascript"</span>
<span style="color:red">src</span><span style="color:blue">="/minified/.js"></</span><span
style="color:#A31515">script</span><span
style="color:blue">></span><o:p></o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span
style="font-size:10.0pt;font-family:Consolas" lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal" style="text-autospace:none"><span
style="font-size:10.0pt;font-family:Consolas;color:blue"
lang="EN-US"></</span><span
style="font-size:10.0pt;font-family:Consolas;color:#A31515"
lang="EN-US">body</span><span
style="font-size:10.0pt;font-family:Consolas;color:blue"
lang="EN-US">></span><span
style="font-size:10.0pt;font-family:Consolas" lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">I ran the following configuration:<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">==============================================================================<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Server information:<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">==============================================================================<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Ensembl version:
75<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Database Host:
10.10.70.119<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">ORM Databases:
user: ensembl_accounts on 10.10.70.119<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">External address: </span><a
moz-do-not-send="true" href="http://ensembl.kws.de:8080/"><span
lang="EN-US">http://ensembl.kws.de:8080/</span></a><span
lang="EN-US"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Real address: </span><a
moz-do-not-send="true" href="http://ensembl.kws.de:8080"><span
lang="EN-US">http://ensembl.kws.de:8080</span></a><span
lang="EN-US"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Search Server: <o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Cache namespace: </span><a
moz-do-not-send="true" href="http://ensembl.kws.de:8080"><span
lang="EN-US">http://ensembl.kws.de:8080</span></a><span
lang="EN-US"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Server root:
/ensembl/ensembl-genomes/release-22<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">PID file:
/ensembl/ensembl-genomes/release-22/logs/ensembl.kws.de.httpd.pid<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Access logs:
/ensembl/ensembl-genomes/release-22/logs/ensembl.kws.de.access_log
ensembl_extended<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Error logs:
/ensembl/ensembl-genomes/release-22/logs/ensembl.kws.de.error_log<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">CSS file: </span><a
moz-do-not-send="true"
href="http://ensembl.kws.de:8080/minified/5ec515962656e919612ba04fbe109094.css"><span
lang="EN-US">http://ensembl.kws.de:8080/minified/5ec515962656e919612ba04fbe109094.css</span></a><span
lang="EN-US"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">JavaScript file: </span><a
moz-do-not-send="true"
href="http://ensembl.kws.de:8080/minified/d215318d4d1cebdf474400add5b8d9d9.js"><span
lang="EN-US">http://ensembl.kws.de:8080/minified/d215318d4d1cebdf474400add5b8d9d9.js</span></a><span
lang="EN-US"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Plugins installed:
EnsEMBL::Genoverse<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">
EG::Plants<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">
</span>EG::Common<o:p></o:p></p>
<p class="MsoPlainText"> EnsEMBL::Users<o:p></o:p></p>
<p class="MsoPlainText"> <o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">==============================================================================<o:p></o:p></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">Any advice?<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">Thank you,<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US">Jan<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif""
lang="EN-US"><o:p> </o:p></span></p>
</div>
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<br>
<pre wrap="">_______________________________________________
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</pre>
</blockquote>
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