<div dir="ltr">Hi Konrad,<div><br></div><div>There isn't currently, but this is something that could be added in future.</div><div><br></div><div>Regards</div><div><br></div><div>Will McLaren</div><div>Ensembl Variation</div>
</div><div class="gmail_extra"><br><br><div class="gmail_quote">On 2 June 2014 20:55, Konrad Karczewski <span dir="ltr"><<a href="mailto:konradk@broadinstitute.org" target="_blank">konradk@broadinstitute.org</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Hello!<div><br></div><div>I've noticed all the collapsing options (--pick, --most_severe, and --per_gene) all seem to choose one consequence per VCF record. However, I would think that for multi-allelic sites, it may be advantageous in many cases to return one for each alternate allele. Maybe I missed it, but is there a way to do this in VEP?<br>
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Thanks!<span class="HOEnZb"><font color="#888888"><br>-Konrad</font></span></div></div>
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