<html>
<head>
<meta content="text/html; charset=windows-1252"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
Hi G<br>
<br>
You can get the coordinates of the PARs wrt X by clicking on them in
the Y, and wrt Y by clicking on them in the X. They're the dark blue
highlighting in these chromosome views:<br>
<a class="moz-txt-link-freetext" href="http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=X:98078104-98178104">http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=X:98078104-98178104</a><br>
<a class="moz-txt-link-freetext" href="http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=Y:22570922-22670922">http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=Y:22570922-22670922</a><br>
<br>
All the best<br>
<br>
Emily<br>
<br>
<div class="moz-cite-prefix">On 26/08/2014 18:02, Genomeo Dev wrote:<br>
</div>
<blockquote
cite="mid:CAKry3c0WM1WEDy-XKoSohtZUVW=s+1BiHiaAN5YHyjuCSWwDOg@mail.gmail.com"
type="cite">
<div dir="ltr">Hi,
<div><br>
</div>
<div>I have a set of genotyped variants on chromosome X which I
would like to impute. To be able to specify the corresponding
reference imputation pannel (PAR1, PAR2 or nonPAR), I need to
know in which of these corresponding regions my variants are
located. </div>
<div><br>
</div>
<div>Could you please provide me with the GRCH37 coordinates in
the x-chromosome delineating PAR1, PAR2 and non PAR?</div>
<div><br>
</div>
<div>Thanks!</div>
<div><br>
</div>
<div>Best regards.</div>
<div>-- <br>
<div dir="ltr">G.</div>
</div>
</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
Dev mailing list <a class="moz-txt-link-abbreviated" href="mailto:Dev@ensembl.org">Dev@ensembl.org</a>
Posting guidelines and subscribe/unsubscribe info: <a class="moz-txt-link-freetext" href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a>
Ensembl Blog: <a class="moz-txt-link-freetext" href="http://www.ensembl.info/">http://www.ensembl.info/</a>
</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Dr Emily Pritchard
Ensembl Outreach Officer
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK </pre>
</body>
</html>