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<body class='hmmessage'><div dir='ltr'>Hello,<div><br></div><div>Just a short question, I am using API from release 75 (downloaded from github branch release 75). </div><div><br></div><div>Does the API automatically use online the genome version of release 75 or do I have to tell it somewhere in the script?</div><div><br></div><div>Best,<br><br><div><hr id="stopSpelling">Date: Wed, 27 Aug 2014 12:02:14 +0100<br>From: emily@ebi.ac.uk<br>To: dev@ensembl.org<br>Subject: Re: [ensembl-dev] GRCH37 coordinates for PAR1, PAR2 and non PAR regions of chromosome X<br><br>
Hi G<br>
<br>
You can get the coordinates of the PARs wrt X by clicking on them in
the Y, and wrt Y by clicking on them in the X. They're the dark blue
highlighting in these chromosome views:<br>
<a class="ecxmoz-txt-link-freetext" href="http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=X:98078104-98178104" target="_blank">http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=X:98078104-98178104</a><br>
<a class="ecxmoz-txt-link-freetext" href="http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=Y:22570922-22670922" target="_blank">http://grch37.ensembl.org/Homo_sapiens/Location/Chromosome?r=Y:22570922-22670922</a><br>
<br>
All the best<br>
<br>
Emily<br>
<br>
<div class="ecxmoz-cite-prefix">On 26/08/2014 18:02, Genomeo Dev wrote:<br>
</div>
<blockquote cite="mid:CAKry3c0WM1WEDy-XKoSohtZUVW=s+1BiHiaAN5YHyjuCSWwDOg@mail.gmail.com">
<div dir="ltr">Hi,
<div><br>
</div>
<div>I have a set of genotyped variants on chromosome X which I
would like to impute. To be able to specify the corresponding
reference imputation pannel (PAR1, PAR2 or nonPAR), I need to
know in which of these corresponding regions my variants are
located. </div>
<div><br>
</div>
<div>Could you please provide me with the GRCH37 coordinates in
the x-chromosome delineating PAR1, PAR2 and non PAR?</div>
<div><br>
</div>
<div>Thanks!</div>
<div><br>
</div>
<div>Best regards.</div>
<div>-- <br>
<div dir="ltr">G.</div>
</div>
</div>
<br>
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</blockquote>
<br>
<pre class="ecxmoz-signature">--
Dr Emily Pritchard
Ensembl Outreach Officer
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK </pre>
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