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I forgot to mention than I've already tried to specify assembly with
VEP "--assembly" flag:<br>
<br>
ERROR: Assembly version specified by --assembly (GRCh37) and
assembly.default meta key (GRCh38) do not match<br>
<br>
<div class="moz-cite-prefix">El 15/09/14 a las #4, Guillermo Marco
Puche escribió:<br>
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<blockquote cite="mid:54169BCB.2090501@sistemasgenomicos.com"
type="cite">
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Hello,<br>
<br>
I installed Ensembl 76 on my local server. I'm not ready yet to
annotate variants vs GRCh38.<br>
I thought that ensembl 76 version supports both GRCh37 and GRCh38.
I downloaded 76 vep cache for GRCh37:<br>
<br>
<a moz-do-not-send="true" class="moz-txt-link-freetext"
href="ftp://ftp.ensembl.org/pub/release-76/variation/VEP/homo_sapiens_merged_vep_76_GRCh37.tar.gz">ftp://ftp.ensembl.org/pub/release-76/variation/VEP/homo_sapiens_merged_vep_76_GRCh37.tar.gz</a><br>
<br>
I get the following error:<br>
<br>
<b>ERROR: Cache assembly version (GRCh37) and database or selected
assembly version (GRCh38) do not match.</b><b><br>
</b><br>
I got a bit confused since I saw both cache for GRCh37/38, I would
like to know if in Ensembl 76 I can stilll annotate with GRCh37 or
I just have to move asap to GRCh38 to use 76 version.<br>
<br>
Thank you.<br>
<br>
Best regards,<br>
Guillermo.<br>
<br>
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<br>
<div class="moz-signature">-- <br>
<title>Guillermo Marco Puche - Firma</title>
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<p><span style="font-size:12px;"><span
style="font-family:arial,helvetica,sans-serif;"><span
style="color:#000066;"><strong>Guillermo Marco
Puche</strong><br>
<br>
Bioinformatician, Computer Science Engineer<br>
Sistemas Genómicos S.L.<br>
Phone: +34 902 364 669 (Ext.777)<br>
Fax: +34 902 364 670</span><br>
<a href="www.sistemasgenomicos.com" target="_blank"><span
style="color:#000066;">www.sistemasgenomicos.com</span></a></span></span></p>
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href="https://www.sistemasgenomicos.com/web_sg/web/areas-bioinformatica.php"><img
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