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<div>Hi Will, </div>
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<div>Sure, here it goes some examples:</div>
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<td height="15" width="65" style="height:15.0pt;width:65pt">exons</td>
<td width="65" style="width:65pt">chr</td>
<td width="65" style="width:65pt">position</td>
<td width="65" style="width:65pt">ref</td>
<td width="65" style="width:65pt">alt</td>
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<td height="15" align="right" style="height:15.0pt">41827</td>
<td align="right">11</td>
<td align="right">117869670</td>
<td>A</td>
<td>G</td>
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<tr height="15" style="height:15.0pt">
<td height="15" align="right" style="height:15.0pt">41827</td>
<td align="right">11</td>
<td align="right">117869878</td>
<td>C</td>
<td>T</td>
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<td height="15" align="right" style="height:15.0pt">12086</td>
<td align="right">16</td>
<td align="right">81819644</td>
<td>A</td>
<td>G</td>
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<div>Cheers,</div>
<div>Eva</div>
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<span style="font-weight:bold">From: </span>Will McLaren <<a href="mailto:wm2@ebi.ac.uk">wm2@ebi.ac.uk</a>><br>
<span style="font-weight:bold">Reply-To: </span>Ensembl developers list <<a href="mailto:dev@ensembl.org">dev@ensembl.org</a>><br>
<span style="font-weight:bold">Date: </span>Tuesday, 28 October 2014 10:33<br>
<span style="font-weight:bold">To: </span>Ensembl developers list <<a href="mailto:dev@ensembl.org">dev@ensembl.org</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [ensembl-dev] Exons numbers in VEP<br>
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<div dir="ltr">Hi Eva,
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<div>This is probably a bug - can you provide an example variant that gives this result?</div>
<div><br>
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<div>Thanks</div>
<div><br>
</div>
<div>Will McLaren</div>
<div>Ensembl Variation</div>
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<div class="gmail_extra"><br>
<div class="gmail_quote">On 28 October 2014 10:17, Eva Goncalves Serra <span dir="ltr">
<<a href="mailto:egs@sanger.ac.uk" target="_blank">egs@sanger.ac.uk</a>></span> wrote:<br>
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<div>Hi, </div>
<div><br>
</div>
<div>After running VEP I realised that some variations do have numbers like ‘46569’ in the Exons number field, rather than for example ’18/20’. Does anyone know why this is?</div>
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<div>Thanks very much,</div>
<div><br>
</div>
<div>Eva</div>
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