<div dir="ltr"><div><div><div><div>Hello Ensembl!<br><br></div>There are multiple gene sets imported from RefSeq in the human other_features database in e77.<br><br></div></div><div>><i>select analysis_id,logic_name,source,count(*) from gene join analysis using (analysis_id) group by source</i><br><span style="font-family:'courier new',monospace"><br><b>analysis_id    logic_name    </b></span><b><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">  </span>source    </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span></b><span style="font-family:'courier new',monospace"><b><span style="font-family:'courier new',monospace">  </span>count(*)</b><br>8359    ccds_import    </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span>ccds    </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span>30493<br>8358    estgene    </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span></span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span></span>ensembl     </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span>30287<br>8166    refseq_human_import    refseq    </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">  </span></span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span>26652<br>8360    refseq_import    </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">  </span></span>BestRefSeq  </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span>27398<br>8360    refseq_import    </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">  </span></span>Curated Genomic    26<br>8360    refseq_import    </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">  </span></span>Gnomon    </span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">    </span></span><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace"><span style="font-family:'courier new',monospace">   </span></span>5363<br></span></div><div><br></div><div><div>I am interested in the gene models imported from RefSeq using GRCh38 reference assembly excluding the alternate loci. It looks like genes from 'BestRefSeq' include alternate loci while genes from 'refseq' don't. </div><div><br></div><div>Could you please explain what the the difference between them are?<br></div></div><div><br></div>Thanks,<br></div>-Kiran<br><div><div><br><br></div></div></div>