<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi VEP crew,<div class=""><br class=""></div><div class="">I've been trying to use newer versions of VEP (77/78) with older versions of the cache (74) and seem to be running into some issues (stack trace below). Any ideas?</div><div class=""><br class=""></div><div class="">Thanks!</div><div class="">-Konrad</div><div class=""><br class=""></div><div class=""><div class="">-------------------- EXCEPTION --------------------</div><div class="">MSG: Can not find internal name for species 'homo_sapiens'</div><div class="">STACK Bio::EnsEMBL::Registry::get_adaptor /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Registry.pm:987</div><div class="">STACK Bio::EnsEMBL::DBSQL::DBAdaptor::AUTOLOAD /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/DBSQL/DBAdaptor.pm:1016</div><div class="">STACK Bio::EnsEMBL::Translation::get_all_Attributes /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Translation.pm:995</div><div class="">STACK Bio::EnsEMBL::Translation::get_all_SeqEdits /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Translation.pm:1069</div><div class="">STACK Bio::EnsEMBL::Variation::BaseTranscriptVariation::_selenocysteine_positions /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/BaseTranscriptVariation.pm:733</div><div class="">STACK Bio::EnsEMBL::Variation::TranscriptVariationAllele::peptide /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm:248</div><div class="">STACK Bio::EnsEMBL::Variation::TranscriptVariation::pep_allele_string /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/TranscriptVariation.pm:230</div><div class="">STACK Bio::EnsEMBL::Variation::TranscriptVariation::_prefetch_for_vep /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/TranscriptVariation.pm:436</div><div class="">STACK Bio::EnsEMBL::Variation::Utils::VEP::whole_genome_fetch_transcript /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/Utils/VEP.pm:3143</div><div class="">STACK Bio::EnsEMBL::Variation::Utils::VEP::whole_genome_fetch /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/Utils/VEP.pm:2997</div><div class="">STACK Bio::EnsEMBL::Variation::Utils::VEP::vf_list_to_cons /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/Utils/VEP.pm:1387</div><div class="">STACK Bio::EnsEMBL::Variation::Utils::VEP::get_all_consequences /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/Utils/VEP.pm:1271</div><div class="">STACK main::main /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/variant_effect_predictor.pl:280</div><div class="">STACK toplevel /humgen/atgu1/fs03/konradk/ensembl-tools-release-77/scripts/variant_effect_predictor/variant_effect_predictor.pl:144</div><div class="">Date (localtime) = Wed Dec 3 20:13:21 2014</div><div class="">Ensembl API version = 77</div><div class="">---------------------------------------------------</div></div><div class=""><div apple-content-edited="true" class="">
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