<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hello Naz,<div>we just had a new ensembl release 78. So either you have to update your APIs to release 78 or you need to specify in the registry that you want to use version 77:</div><div><pre style="color: rgb(0, 0, 0); font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; white-space: pre-wrap;">$registry->load_registry_from_db(
-host => 'ensembldb.ensembl.org',
-user => 'anonymous',
-DB_VERSION => 77,
);</pre><div>Best regards,</div><div>Anja</div><div><br></div><div><div>On 4 Dec 2014, at 13:08, Nazmiye Uzun wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Dear developers<br><br>I am trying to test below code snippet provided on the variation_tutorial page to display attributes of the variations in a particular variation set. Here's a section of the code from the following page;<br><br><a href="http://www.ensembl.org/info/docs/api/variation/variation_tutorial.html#variation_sets">http://www.ensembl.org/info/docs/api/variation/variation_tutorial.html#variation_sets</a><br><br><br><br>my $vs_adaptor = $registry->get_adaptor('human','variation','variationset');<br>my $vs = $vs_adaptor->fetch_by_short_name('ph_variants');<br><br>my $limit = 10;<br>my $fetched = 0;<br>my $it = $vs->get_Variation_Iterator();<br><br># Get the first 10 examples and print some data from them<br> while ($fetched < $limit && $it->has_next()) {<br><br> # Print the name of the variation<br> my $var = $it->next();<br> printf("\t\%s has been found to be associated with:\n",$var->name());<br><br> #<br> # Do more<br> #<br><br> $fetched++;<br> }<br><br><br>However, I receive the following error:<br>DBD::mysql::st execute failed: Unknown column 'v.display' in 'where clause' at -----/src/ensembl-variation/modules/Bio/EnsEMBL/Variation/DBSQL/VariationAdaptor.pm line 1173.<br><br>The version of the API I'm using is 77.<br><br>I appreciate any input. Thanks for the help in advance.<br><br>Regards<br>Naz<br><br>----------------------------------------------------------------<br>This message was sent using IMP, the Internet Messaging Program.<br><br><br>_______________________________________________<br>Dev mailing list Dev@ensembl.org<br>Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev<br>Ensembl Blog: http://www.ensembl.info/<br></div></blockquote></div><br></div></body></html>