<div dir="ltr">Dear Julien,<div><br></div><div>If you do the following, it should work (I notice this isn't in the docs at <a href="http://www.ensembl.org/info/docs/api/api_git.html">http://www.ensembl.org/info/docs/api/api_git.html</a>):</div><div><br></div><div><pre style="font-family:'Courier New',Courier,monospace;font-size:13px;margin-top:0px;margin-bottom:16px;line-height:16px;color:rgb(85,85,85)">git clone <a href="https://github.com/bioperl/bioperl-live.git">https://github.com/bioperl/bioperl-live.git</a>
cd bioperl-live
git checkout bioperl-release-1-6-1</pre></div><div>Cheers,<br></div><div><br>Steve</div></div><div class="gmail_extra"><br><div class="gmail_quote">On 18 December 2014 at 12:07, Julien Roux <span dir="ltr"><<a href="mailto:julien.roux@unil.ch" target="_blank">julien.roux@unil.ch</a>></span> wrote:<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear list,<br>
<br>
I wanted to let you know that the installation of bioperl from Git (git clone <a href="https://github.com/bioperl/bioperl-live.git" target="_blank">https://github.com/bioperl/<u></u>bioperl-live.git</a>) seems to be missing some files, which leads to an error message when using the Ensembl API<br>
For example folder bioperl-live/Bio/Root/ does not include Root.pm, it includes only a script HTTPget.pm<br>
<br>
Installing from the archive at <a href="http://bioperl.org/DIST/BioPerl-1.6.1.tar.gz" target="_blank">http://bioperl.org/DIST/<u></u>BioPerl-1.6.1.tar.gz</a> solved the problem since all files are included now.<br>
<br>
Regards,<br>
Julien<span class="HOEnZb"><font color="#888888"><br>
<br>
-- <br>
Julien Roux<br>
Marie-Curie postdoctoral fellow<br>
Department of Ecology and Evolution, University of Lausanne, Switzerland<br>
<a href="http://www.unil.ch/dee/home/menuinst/people/post-docs--associates/dr-julien-roux.html" target="_blank">http://www.unil.ch/dee/home/<u></u>menuinst/people/post-docs--<u></u>associates/dr-julien-roux.html</a><br>
Tel: <a href="tel:%2B41%2078%20700%202931" value="+41787002931" target="_blank">+41 78 700 2931</a><br>
<br>
<br>
______________________________<u></u>_________________<br>
Dev mailing list    <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a><br>
Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank">http://lists.ensembl.org/<u></u>mailman/listinfo/dev</a><br>
Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a><br>
</font></span></blockquote></div><br clear="all"><div><br></div>-- <br><div class="gmail_signature"><div dir="ltr"><a href="http://about.me/gawbul" style="margin:0px;padding:0px;border:0px;outline:0px;font-size:14px;vertical-align:baseline;color:rgb(43,130,173);text-decoration:none;line-height:18px" target="_blank"><font face="tahoma, sans-serif"></font><table border="0" cellpadding="0" cellspacing="0" style="margin:0px;padding:0px;border:0px;outline:0px;font-style:inherit;vertical-align:baseline;border-spacing:0px"><tbody style="margin:0px;padding:0px;border:0px;outline:0px;font-style:inherit;vertical-align:baseline"><tr style="margin:0px;padding:0px;border:0px;outline:0px;font-style:inherit;vertical-align:baseline"><td style="padding:0px;border:0px;outline:0px;font-style:inherit;font-size:0px;vertical-align:baseline;height:30px"> </td></tr><tr style="margin:0px;padding:0px;border:0px;outline:0px;font-style:inherit;vertical-align:baseline"><td align="left" valign="top" style="padding:0px;border:0px;outline:0px;font-style:inherit;vertical-align:top;line-height:1"><div style="margin:0px;padding:0px;border:0px;outline:0px;font-weight:bold;font-style:inherit;font-size:18px;vertical-align:baseline;line-height:1;color:rgb(51,51,51)">Steve Moss</div><div style="margin:3px 0px 0px;padding:0px;border:0px;outline:0px;font-style:inherit;font-size:12px;vertical-align:baseline">about.me/gawbul</div></td></tr><tr style="margin:0px;padding:0px;border:0px;outline:0px;font-style:inherit;vertical-align:baseline"><td align="left" valign="top" style="padding:8px 0px 0px;border:0px;outline:0px;font-style:inherit;vertical-align:top;line-height:1"><div style="margin:0px;padding:0px;border:0px;outline:0px;font-style:inherit;vertical-align:baseline;text-align:right;background-color:rgb(197,208,224);height:4px"><img src="http://d13pix9kaak6wt.cloudfront.net/signature/colorbar.png" alt="Steve Moss on about.me" width="88" height="4" style="margin:0px;padding:0px;border:0px;outline:0px;font-style:inherit;vertical-align:baseline;float:right;display:block"></div></td></tr><tr style="margin:0px;padding:0px;border:0px;outline:0px;font-style:inherit;vertical-align:baseline"><td style="padding:0px;border:0px;outline:0px;font-style:inherit;font-size:0px;vertical-align:baseline;height:20px"> </td></tr></tbody></table></a></div></div>
</div>