<div dir="ltr"><div>Dear Steffen,<br><br>Thanks for the advice. I may well use the packages instead... in fact, I think MySQL installs them as dependencies anyway? I was actually considering using the MariaDB client instead, because Oracle are evil ;) This caused some issues with the DBI::mysql build, however that I need to investigate some more.<br><br></div><div>With regards BioPerl - I think I need to check out versions 1.6.1 actually, as EnsEMBL doesn't gaurantee compatibility with newer versions... will amend that later.<br><br></div>Cheers,<br><br>Steve<br></div><div class="gmail_extra"><br><div class="gmail_quote">On 18 December 2014 at 17:52, "Steffen Möller" <span dir="ltr"><<a href="mailto:steffen_moeller@gmx.de" target="_blank">steffen_moeller@gmx.de</a>></span> wrote:<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div style="font-family:Verdana;font-size:12.0px"><div>
<div>Hello, nice,</div>
<div> </div>
<div>There is a libdbd-mysql-perl package that you might want to to use instead of getting it from CPAN. BioPerl with Debian/Ubuntu is at 1.6.924-1, while you clone 1.6.901 with git. Such older versions you get (for all packages, btw) from <a href="http://snapshot.debian.org/package/bioperl/1.6.901-4/" target="_blank">http://snapshot.debian.org/package/bioperl/1.6.901-4/</a> , just add it to your /etc/apt/sources.list and perform a versioned install as in apt-get install bioperl=1.6.901 .</div>
<div> </div>
<div>If there is a particular package you prefer to see shipping with the distribution directly instead of compiling it while preparing your container then please tell me or raise your voice on the Debian Med mailing list.</div>
<div> </div>
<div>Many thanks for your efforts</div>
<div> </div>
<div>Steffen</div>
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<div style="margin:0 0 10px 0"><b>Gesendet:</b> Donnerstag, 18. Dezember 2014 um 15:41 Uhr<br>
<b>Von:</b> "Steve Moss" <<a href="mailto:gawbul@gmail.com" target="_blank">gawbul@gmail.com</a>><br>
<b>An:</b> "<a href="mailto:dev@ensembl.org" target="_blank">dev@ensembl.org</a>" <<a href="mailto:dev@ensembl.org" target="_blank">dev@ensembl.org</a>><br>
<b>Betreff:</b> [ensembl-dev] Docker container for EnsEMBL development...</div>
<div name="quoted-content"><div><div class="h5">
<div>Dear EnsEMBL Dev,
<div> </div>
<div>I recently built a Docker image with the EnsEMBL Perl APIs pre-installed to assist with developing scripts and undertaking analyses using EnsEMBL's data.</div>
<div> </div>
<div>You can find the code here: <a href="https://github.com/gawbul/docker-ensembl" target="_blank">https://github.com/gawbul/docker-ensembl</a></div>
<div> </div>
<div>I would welcome any suggestions on additional steps/fixes that I could add to the Dockerfile to enhance the image.</div>
<div> </div>
<div>Cheers,</div>
<div> </div>
<div>Steve
<div> </div>
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