<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><br></div>Hi Anne and EnsEMBLers, <div><br></div><div>I haven't heard back from you guys for a while … but it could well be that I missed the email with more details. </div><div><br></div><div>Is there a slight chance that the data dump could be provided before the holidays, as kind of like an end-of-the-year present for us ? </div><div>Doesn't have to be wrapped :-) </div><div><br></div><div>Jan </div><div><br></div><div><br><div><div>On Oct 9, 2014, at 5:10 AM, Jan Vogel <<a href="mailto:jan.vogel@gmail.com">jan.vogel@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div dir="ltr">Hello Anne, <div><br></div><div>a dump would be great. If you don't have a site / location, I can send you my dropbox link. </div><div>we could also use the Max-Planck-Institute websafe <a href="https://ws.molgen.mpg.de/cgi-bin/websafe">https://ws.molgen.mpg.de/cgi-bin/websafe</a> for exchange. </div><div><br></div><div>Thanks again, </div><div><br></div><div> Jan</div><div><br></div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Oct 7, 2014 at 4:32 AM, Anne Lyle <span dir="ltr"><<a href="mailto:annelyle@ebi.ac.uk" target="_blank">annelyle@ebi.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Hi Jan<div><br></div><div>You’re right that not all data is provided for “pre” species - we’ve started producing the basic FASTA files (DNA, cDNA, etc) as a matter of routine but that’s about it. I’ll have a look at sorting out a MySQL dump for you, though.</div><div><br></div><div>As for plans, I’ll have to leave that up to the genebuilders to comment on.</div><div><br></div><div>Regards</div><div><br></div><div>Anne</div><div><br></div><div><br></div><div><br><div>
<div style="text-align:start;text-indent:0px;word-wrap:break-word"><div style="text-align:start;text-indent:0px;word-wrap:break-word"><div style="letter-spacing: normal; text-transform: none; white-space: normal; word-spacing: 0px; ">Anne Lyle</div><div style="letter-spacing: normal; text-transform: none; white-space: normal; word-spacing: 0px; ">Ensembl Web Developer</div><div style="letter-spacing: normal; text-transform: none; white-space: normal; word-spacing: 0px; ">European Bioinformatics Institute (EMBL-EBI)</div><div>East Wing, A3-118, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK</div><div><br></div><div>Phone: <a href="tel:%2B44%20%280%291223%20494178" value="+441223494178" target="_blank">+44 (0)1223 494178</a></div><div>Email: <a href="mailto:annelyle@ebi.ac.uk" target="_blank">annelyle@ebi.ac.uk</a></div><div style="letter-spacing: normal; text-transform: none; white-space: normal; word-spacing: 0px; ">Web: <a href="http://www.ensembl.org/" target="_blank">www.ensembl.org</a></div><div style="letter-spacing: normal; text-transform: none; white-space: normal; word-spacing: 0px; "><br></div></div><br></div><br><br>
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<br><div><div><div class="h5"><div>On 6 Oct 2014, at 19:03, Jan Vogel <<a href="mailto:jan.vogel@gmail.com" target="_blank">jan.vogel@gmail.com</a>> wrote:</div><br></div></div><blockquote type="cite"><div><div class="h5"><div style="word-wrap:break-word"><div><br></div><div>Hello Ensembl, </div><div><br></div><div>I've seen that the crab-eating macaque assembly is up in <a href="http://pre.ensembl.org/" target="_blank">pre.ensembl.org</a>, based on MacFas5.0: </div><div><br></div><div><a href="http://pre.ensembl.org/Macaca_fascicularis/Info/Index/" target="_blank">http://pre.ensembl.org/Macaca_fascicularis/Info/Index/</a></div><div><br></div><div>This is great, as I'm really interested in this organism and I like to work it. </div><div><br></div><div>I'm looking for the mysql dump for Macaca Fascicularis so I can re-create the core database in m own environment - however, I did not find anything on the usual FTP server: </div><div><br></div><div><a href="ftp://ftp.ensembl.org/pub/pre/gtf/macaca_fascicularis/" target="_blank">ftp://ftp.ensembl.org/pub/pre/gtf/macaca_fascicularis/</a></div><div><br></div><div>I also couldn't find the pre-db on the public mysql server…. </div><div><br></div><div>Any chance ensembl can provide this data ? Or does it exist and i just didn't find it ? </div><div><br></div><div>I'm aware that this is an ensembl pre-build, that not all standard data is available and this is all just "early-access". </div><div><br></div><div>On a different note, it would also be great to know what the general plans with this species are - Is Ensembl planning on a full build or a projection build ? And is there a rough date when such a build will be released ? </div><div><br></div><div>Thanks, </div><div><br></div><div> Jan Vogel </div></div></div></div>_______________________________________________<br>Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a><br>Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank">http://lists.ensembl.org/mailman/listinfo/dev</a><br>Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a><br></blockquote></div><br></div></div><br>_______________________________________________<br>
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