<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Thanks Steve ! <div><br></div><div>That's great - I'm downloading it right now. It's great to have access to it so we can start aligning some sequences … </div><div><br></div><div>Regards, and have a good, long, relaxing xmas break!</div><div><br></div><div>Jan</div><div><br></div><div><br></div><div><div><div>On Dec 22, 2014, at 3:47 PM, Steve Trevanion <<a href="mailto:steve@ebi.ac.uk">steve@ebi.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">
  
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    Hi Jan,<br>
    <br>
    Sorry for the delay. I have a MySQL dump of the 75 schema database
    and have put it, gift wrapped, on the Pre! FTP site
(<a class="moz-txt-link-freetext" href="ftp://ftp.ensembl.org/pub/pre/mysql/75/pre_macaca_fascicularis_core_75_1">ftp://ftp.ensembl.org/pub/pre/mysql/75/pre_macaca_fascicularis_core_75_1</a>).<br>
    <br>
    I can't comment on the genebuilders plans for this species<br>
    <br>
    Cheers,<br>
    <br>
    Steve<br>
    <br>
    <div class="moz-cite-prefix">On 21/12/14 22:21, Jan Vogel wrote:<br>
    </div>
    <blockquote cite="mid:F1F1E2AB-E450-4A89-9991-E2BAE79A3428@gmail.com" type="cite">
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      Hi Anne and EnsEMBLers, 
      <div><br>
      </div>
      <div>I haven't heard back from you guys for a while … but it could
        well be that I missed the email with more details. </div>
      <div><br>
      </div>
      <div>Is there a slight chance that the data dump could be provided
        before the holidays,  as kind of like an end-of-the-year present
        for us ? </div>
      <div>Doesn't have to be wrapped :-) </div>
      <div><br>
      </div>
      <div>Jan </div>
      <div><br>
      </div>
      <div><br>
        <div>
          <div>On Oct 9, 2014, at 5:10 AM, Jan Vogel <<a moz-do-not-send="true" href="mailto:jan.vogel@gmail.com">jan.vogel@gmail.com</a>>
            wrote:</div>
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          <blockquote type="cite">
            <div dir="ltr">Hello Anne, 
              <div><br>
              </div>
              <div>a dump would be great. If you don't have a site /
                location, I can send you my dropbox link. </div>
              <div>we could also use the Max-Planck-Institute websafe <a moz-do-not-send="true" href="https://ws.molgen.mpg.de/cgi-bin/websafe">https://ws.molgen.mpg.de/cgi-bin/websafe</a>
                for exchange. </div>
              <div><br>
              </div>
              <div>Thanks again, </div>
              <div><br>
              </div>
              <div>   Jan</div>
              <div><br>
              </div>
              <div><br>
              </div>
            </div>
            <div class="gmail_extra"><br>
              <div class="gmail_quote">On Tue, Oct 7, 2014 at 4:32 AM,
                Anne Lyle <span dir="ltr"><<a moz-do-not-send="true" href="mailto:annelyle@ebi.ac.uk" target="_blank">annelyle@ebi.ac.uk</a>></span>
                wrote:<br>
                <blockquote class="gmail_quote" style="margin:0 0 0
                  .8ex;border-left:1px #ccc solid;padding-left:1ex">
                  <div style="word-wrap:break-word">Hi Jan
                    <div><br>
                    </div>
                    <div>You’re right that not all data is provided for
                      “pre” species - we’ve started producing the basic
                      FASTA files (DNA, cDNA, etc) as a matter of
                      routine but that’s about it. I’ll have a look at
                      sorting out a MySQL dump for you, though.</div>
                    <div><br>
                    </div>
                    <div>As for plans, I’ll have to leave that up to the
                      genebuilders to comment on.</div>
                    <div><br>
                    </div>
                    <div>Regards</div>
                    <div><br>
                    </div>
                    <div>Anne</div>
                    <div><br>
                    </div>
                    <div><br>
                    </div>
                    <div><br>
                      <div>
                        <div style="text-align:start;text-indent:0px;word-wrap:break-word">
                          <div style="text-align:start;text-indent:0px;word-wrap:break-word">
                            <div style="letter-spacing: normal;
                              text-transform: none; white-space: normal;
                              word-spacing: 0px; ">Anne Lyle</div>
                            <div style="letter-spacing: normal;
                              text-transform: none; white-space: normal;
                              word-spacing: 0px; ">Ensembl Web Developer</div>
                            <div style="letter-spacing: normal;
                              text-transform: none; white-space: normal;
                              word-spacing: 0px; ">European
                              Bioinformatics Institute (EMBL-EBI)</div>
                            <div>East Wing, A3-118, Wellcome Trust
                              Genome Campus, Hinxton, Cambridge, UK</div>
                            <div><br>
                            </div>
                            <div>Phone: <a moz-do-not-send="true" href="tel:%2B44%20%280%291223%20494178" value="+441223494178" target="_blank">+44
                                (0)1223 494178</a></div>
                            <div>Email: <a moz-do-not-send="true" href="mailto:annelyle@ebi.ac.uk" target="_blank">annelyle@ebi.ac.uk</a></div>
                            <div style="letter-spacing: normal;
                              text-transform: none; white-space: normal;
                              word-spacing: 0px; ">Web: <a moz-do-not-send="true" href="http://www.ensembl.org/" target="_blank">www.ensembl.org</a></div>
                            <div style="letter-spacing: normal;
                              text-transform: none; white-space: normal;
                              word-spacing: 0px; "><br>
                            </div>
                          </div>
                          <br>
                        </div>
                        <br>
                        <br>
                      </div>
                      <br>
                      <div>
                        <div>
                          <div class="h5">
                            <div>On 6 Oct 2014, at 19:03, Jan Vogel <<a moz-do-not-send="true" href="mailto:jan.vogel@gmail.com" target="_blank">jan.vogel@gmail.com</a>>
                              wrote:</div>
                            <br>
                          </div>
                        </div>
                        <blockquote type="cite">
                          <div>
                            <div class="h5">
                              <div style="word-wrap:break-word">
                                <div><br>
                                </div>
                                <div>Hello Ensembl, </div>
                                <div><br>
                                </div>
                                <div>I've seen that the crab-eating
                                  macaque assembly is up in <a moz-do-not-send="true" href="http://pre.ensembl.org/" target="_blank">pre.ensembl.org</a>,
                                  based on MacFas5.0: </div>
                                <div><br>
                                </div>
                                <div><a moz-do-not-send="true" href="http://pre.ensembl.org/Macaca_fascicularis/Info/Index/" target="_blank">http://pre.ensembl.org/Macaca_fascicularis/Info/Index/</a></div>
                                <div><br>
                                </div>
                                <div>This is great, as I'm really
                                  interested in this organism and I like
                                  to work it. </div>
                                <div><br>
                                </div>
                                <div>I'm looking for the mysql dump for
                                  Macaca Fascicularis so I can re-create
                                  the core database in m own environment
                                  - however, I did not find anything on
                                  the usual FTP server: </div>
                                <div><br>
                                </div>
                                <div><a moz-do-not-send="true" href="ftp://ftp.ensembl.org/pub/pre/gtf/macaca_fascicularis/" target="_blank">ftp://ftp.ensembl.org/pub/pre/gtf/macaca_fascicularis/</a></div>
                                <div><br>
                                </div>
                                <div>I also couldn't find the pre-db on
                                  the public mysql server…. </div>
                                <div><br>
                                </div>
                                <div>Any chance ensembl can provide this
                                  data ? Or does it exist and i just
                                  didn't find it ? </div>
                                <div><br>
                                </div>
                                <div>I'm aware that this is  an ensembl
                                  pre-build, that not all standard data
                                  is available and this is all just
                                  "early-access". </div>
                                <div><br>
                                </div>
                                <div>On a different note, it would also
                                  be great to know what the general
                                  plans with this species are - Is
                                  Ensembl planning on a full build or a
                                  projection build ? And is there a
                                  rough date when such a build will be
                                  released ? </div>
                                <div><br>
                                </div>
                                <div>Thanks, </div>
                                <div><br>
                                </div>
                                <div>   Jan Vogel </div>
                              </div>
                            </div>
                          </div>
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                        </blockquote>
                      </div>
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                  <br>
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                  <br>
                </blockquote>
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      <pre wrap="">_______________________________________________
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</pre>
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_______________________________________________<br>Dev mailing list    <a href="mailto:Dev@ensembl.org">Dev@ensembl.org</a><br>Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a><br>Ensembl Blog: <a href="http://www.ensembl.info/">http://www.ensembl.info/</a><br></blockquote></div><br></div></body></html>