Great, thanks a lot! /Greg<br><br><div class="gmail_quote">On Wed Jan 14 2015 at 4:35:40 PM mag <<a href="mailto:mr6@ebi.ac.uk">mr6@ebi.ac.uk</a>> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
Hi Greg,<br>
<br>
The list of all three-letter species code can be found here:<br>
<a href="http://www.ensembl.org/info/genome/stable_ids/index.html" target="_blank">http://www.ensembl.org/info/genome/stable_ids/index.html</a><br>
<br>
This information is also stored in the database for each species,
for the meta_key species.stable_id_prefix<br>
<br>
<br>
Hope that helps,<br>
Magali</div><div bgcolor="#FFFFFF" text="#000000"><br>
<br>
<div>On 14/01/2015 15:54, Greg Slodkowicz
wrote:<br>
</div>
</div><div bgcolor="#FFFFFF" text="#000000"><blockquote type="cite">Hi all,<br>
I was wondering what's the best way to get a comprehensive list of
the three-letter species codes, as they appear in various
identifiers, such as 'ENSMUSG...' etc., ideally also with a
mapping to numerical taxids?<br>
<br>
I found the list at <a href="http://www.ensembl.org/info/about/species.html" target="_blank">http://www.ensembl.org/info/about/species.html</a>
and I can see that there is an option to export the table to CSV
but the three letter codes are not there.<br>
<br>
<br>
Best,<br>
Greg<br>
<br>
<fieldset></fieldset>
<br>
</blockquote></div><div bgcolor="#FFFFFF" text="#000000"><blockquote type="cite"><pre>_______________________________________________
Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a>
Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank">http://lists.ensembl.org/mailman/listinfo/dev</a>
Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a>
</pre>
</blockquote></div>
______________________________<u></u>_________________<br>
Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a><br>
Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank">http://lists.ensembl.org/<u></u>mailman/listinfo/dev</a><br>
Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a><br>
</blockquote></div>