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Hi Magali,
<div>Thank you very much for quick response. I did try with the -genomes option but still getting the error below. </div>
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<div style="margin: 0px; font-size: 11px; font-family: Menlo;">UNIVERSAL->import is deprecated and will be removed in a future perl at /home/radhika/ensembl-tools-release-78/scripts/variant_effect_predictor/Bio/Tree/TreeFunctionsI.pm line 94.</div>
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<div style="margin: 0px; font-size: 11px; font-family: Menlo;">ERROR: No cache found for triticum_aestivum, version 78</div>
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<div style="margin: 0px; font-size: 11px; font-family: Menlo;">Based on the comments found at the link, I thought it might be because of the version issue.</div>
<div style="margin: 0px; font-size: 11px; font-family: Menlo;"><a href="http://comments.gmane.org/gmane.science.biology.ensembl.devel/9198">http://comments.gmane.org/gmane.science.biology.ensembl.devel/9198</a></div>
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<div style="margin: 0px; font-size: 11px; font-family: Menlo;">So, I changed the version to 77, this is the error I get when I change the version.</div>
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<div style="margin: 0px; font-size: 11px; font-family: Menlo;">perl variant_effect_predictor.pl -i /berber/radhika/seq_for_assaf/mpileup_on_rmdup/Zavitan_var.flt_d6_a4.vcf -genomes --species triticum_aestivum --cache -db_version 77</div>
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<div style="margin: 0px; font-size: 11px; font-family: Menlo;">UNIVERSAL->import is deprecated and will be removed in a future perl at /home/radhika/ensembl-tools-release-78/scripts/variant_effect_predictor/Bio/Tree/TreeFunctionsI.pm line 94.</div>
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<div style="margin: 0px; font-size: 11px; font-family: Menlo;">For triticum_aestivum_core_24_77_1 there is a difference in the software release (78) and the database release (77). You should update one of these to ensure that your script does not crash.</div>
<div style="margin: 0px; font-size: 11px; font-family: Menlo;">For triticum_aestivum_variation_24_77_1 there is a difference in the software release (78) and the database release (77). You should update one of these to ensure that your script does not crash.</div>
<div style="margin: 0px; font-size: 11px; font-family: Menlo;">ERROR: No cache found for triticum_aestivum, version 77</div>
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<div style="margin: 0px; font-size: 11px; font-family: Menlo;">Thank you,</div>
<div style="margin: 0px; font-size: 11px; font-family: Menlo;">Radhika</div>
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<div>On Feb 3, 2015, at 4:46 PM, <<a href="mailto:mr6@ebi.ac.uk">mr6@ebi.ac.uk</a>> <<a href="mailto:mr6@ebi.ac.uk">mr6@ebi.ac.uk</a>> wrote:</div>
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<blockquote type="cite"><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;">Public</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;">
<span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;">database
server</span></blockquote>
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