<div dir="ltr">Hello,<div><br></div><div>Apologies, this is a bug in our API code.</div><div><br>We'll get a patch pushed out to the servers soon.</div><div><br></div><div>Regards</div><div><br></div><div>Will McLaren</div><div>Ensembl Variation</div></div><div class="gmail_extra"><br><div class="gmail_quote">On 13 February 2015 at 14:00, ls <span dir="ltr"><<a href="mailto:lshen86@gmail.com" target="_blank">lshen86@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">The VEP returned start position is same as stop position, which is suspicious for me.<br>
<br>
<a href="http://grch37.rest.ensembl.org/vep/human/hgvs/1:g.19377071_19377074del?content-type=application/json" target="_blank">http://grch37.rest.ensembl.<u></u>org/vep/human/hgvs/1:g.<u></u>19377071_19377074del?content-<u></u>type=application/json</a><br>
<br>
<br>
[{"assembly_name":"GRCh37","<u></u>end":19377074,"seq_region_<u></u>name":"1","strand":1,"id":"1:<u></u>g.19377071_19377074del","<u></u>intergenic_consequences":[{"<u></u>consequence_terms":["<u></u>intergenic_variant"]}],"<u></u>allele_string":"CCCG/-","most_<u></u>severe_consequence":"<u></u>intergenic_variant","start":<u></u>19377074}]<br>
<br>
<br>
OR with delCCCG in input:<br>
<a href="http://grch37.rest.ensembl.org/vep/human/hgvs/1:g.19377071_19377074delCCCG?content-type=application/json" target="_blank">http://grch37.rest.ensembl.<u></u>org/vep/human/hgvs/1:g.<u></u>19377071_19377074delCCCG?<u></u>content-type=application/json</a><br>
<br>
[{"assembly_name":"GRCh37","<u></u>end":19377074,"seq_region_<u></u>name":"1","strand":1,"id":"1:<u></u>g.19377071_19377074delCCCG","<u></u>intergenic_consequences":[{"<u></u>consequence_terms":["<u></u>intergenic_variant"]}],"<u></u>allele_string":"CCCG/-","most_<u></u>severe_consequence":"<u></u>intergenic_variant","start":<u></u>19377074}]<br>
<br>
<br>
<br>
<br>
# my reformatted text:<br>
<br>
Input:  1:g.19377071_19377074del<br>
<br>
VEP output:<br>
<br>
Assembly_name : GRCh37<br>
Chromosome : 1<br>
Start : 19377074<br>
End : 19377074<br>
ID : 1:g.19377071_19377074del<br>
Allele_string : CCCG/-<br>
Most_severe_consequence : intergenic_variant<br>
HGVS_g: 1:g.19377074delCCCG<br>
<br>
<br>
<br>
<br>
Lishuang Shen<br>
<br>
<br>
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</blockquote></div><br></div>