<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=us-ascii">
<meta name="Generator" content="Microsoft Word 14 (filtered medium)">
<style><!--
/* Font Definitions */
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
@font-face
{font-family:Tahoma;
panose-1:2 11 6 4 3 5 4 4 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0in;
margin-bottom:.0001pt;
font-size:11.0pt;
font-family:"Calibri","sans-serif";}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:blue;
text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
{mso-style-priority:99;
color:purple;
text-decoration:underline;}
p.MsoPlainText, li.MsoPlainText, div.MsoPlainText
{mso-style-priority:99;
mso-style-link:"Plain Text Char";
margin:0in;
margin-bottom:.0001pt;
font-size:11.0pt;
font-family:"Calibri","sans-serif";}
p.MsoAcetate, li.MsoAcetate, div.MsoAcetate
{mso-style-priority:99;
mso-style-link:"Balloon Text Char";
margin:0in;
margin-bottom:.0001pt;
font-size:8.0pt;
font-family:"Tahoma","sans-serif";}
span.PlainTextChar
{mso-style-name:"Plain Text Char";
mso-style-priority:99;
mso-style-link:"Plain Text";
font-family:"Calibri","sans-serif";}
span.BalloonTextChar
{mso-style-name:"Balloon Text Char";
mso-style-priority:99;
mso-style-link:"Balloon Text";
font-family:"Tahoma","sans-serif";}
.MsoChpDefault
{mso-style-type:export-only;
font-family:"Calibri","sans-serif";}
@page WordSection1
{size:8.5in 11.0in;
margin:1.0in 1.0in 1.0in 1.0in;}
div.WordSection1
{page:WordSection1;}
--></style><!--[if gte mso 9]><xml>
<o:shapedefaults v:ext="edit" spidmax="1026" />
</xml><![endif]--><!--[if gte mso 9]><xml>
<o:shapelayout v:ext="edit">
<o:idmap v:ext="edit" data="1" />
</o:shapelayout></xml><![endif]-->
</head>
<body lang="EN-US" link="blue" vlink="purple">
<div class="WordSection1">
<p class="MsoPlainText">Hi,<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">CHECKSUM.gz file has been downloaded properly, thanks for the fix provided.<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Now we face problem with *.sql.gz file in all the organism folders. After data download, while performing the integrity check, we get the following error:<o:p></o:p></p>
<p class="MsoPlainText"><span style="font-size:10.0pt;font-family:"Courier New";color:blue"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span style="font-size:10.0pt;font-family:"Courier New";color:blue">“vicugna_pacos_core_79_1.sql.gz was meant to have a checksum of 36887 5 but got 17749 5 in …/ensembl/release-79/mysql/vicugna_pacos_core_79_1”<o:p></o:p></span></p>
<p class="MsoPlainText"><span style="font-size:10.0pt;font-family:"Courier New";color:blue"><o:p> </o:p></span></p>
<p class="MsoPlainText">Could you please look into this?<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Thanks & Regards,<o:p></o:p></p>
<p class="MsoPlainText">Swapnika <o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">-----Original Message-----<br>
From: dev-bounces@ensembl.org [mailto:dev-bounces@ensembl.org] On Behalf Of Mekala, Swapnika (Ext)<br>
Sent: Friday, March 20, 2015 4:26 PM<br>
To: Ensembl developers list<br>
Cc: Madhusoodanan, Nandana (Ext)<br>
Subject: Re: [ensembl-dev] ENSEMBL | No required permission to download ftp.ensembl.org/release-79/mysql/*/CHECKSUMS.gz file</p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Hi Amonida,<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Thank you!<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Best Regards,<o:p></o:p></p>
<p class="MsoPlainText">Swapnika<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">-----Original Message-----<o:p></o:p></p>
<p class="MsoPlainText">From: <a href="mailto:dev-bounces@ensembl.org"><span style="color:windowtext;text-decoration:none">dev-bounces@ensembl.org</span></a> [<a href="mailto:dev-bounces@ensembl.org"><span style="color:windowtext;text-decoration:none">mailto:dev-bounces@ensembl.org</span></a>]
On Behalf Of Amonida Zadissa<o:p></o:p></p>
<p class="MsoPlainText">Sent: Friday, March 20, 2015 4:19 PM<o:p></o:p></p>
<p class="MsoPlainText">To: Ensembl developers list<o:p></o:p></p>
<p class="MsoPlainText">Cc: Madhusoodanan, Nandana (Ext)<o:p></o:p></p>
<p class="MsoPlainText">Subject: Re: [ensembl-dev] ENSEMBL | No required permission to download
<a href="ftp://ftp.ensembl.org/release-79/mysql/*/CHECKSUMS.gz"><span style="color:windowtext;text-decoration:none">ftp.ensembl.org/release-79/mysql/*/CHECKSUMS.gz</span></a> file<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Hi there,<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">This has now been fixed on the FTP site, sorry for the inconvenience.<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Best regards,<o:p></o:p></p>
<p class="MsoPlainText">Amonida<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">On 20/03/2015 09:56, Mekala, Swapnika (Ext) wrote:<o:p></o:p></p>
<p class="MsoPlainText">> Hi,<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">> We are from Ensembl support team. We are trying to download the latest release of Ensembl application; i.e. release-79 to our environment.<o:p></o:p></p>
<p class="MsoPlainText">> The compressed sql and txt files are getting downloaded properly, but not CHECKSUMS.gz file. The only uncommon thing we observed in the same organism folder among other releases is "permissions".<o:p></o:p></p>
<p class="MsoPlainText">> Example, at <a href="ftp://ftp.ensembl.org:/pub/release-79/mysql/xiphophorus_maculatus_rnaseq_79_1/<ftp:/ftp.ensembl.org:/pub/release-79/mysql/xiphophorus_maculatus_rnaseq_79_1/">
<span style="color:windowtext;text-decoration:none">ftp.ensembl.org:/pub/release-79/mysql/xiphophorus_maculatus_rnaseq_79_1/<ftp://ftp.ensembl.org:/pub/release-79/mysql/xiphophorus_maculatus_rnaseq_79_1/</span></a>>, CHECKSUMZ.gz file has only r & x permissions
"-r-xr-x---". Whereas in release-78, CHEKCSUMS.gz file has w permission "-rwxrwxr-x" also.<o:p></o:p></p>
<p class="MsoPlainText">> Could you please let us know how can we get the CHECKSUMS.gz file to our environment?<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">> Thanks & Regards,<o:p></o:p></p>
<p class="MsoPlainText">> Swapnika Mekala<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">> _______________________________________________<o:p></o:p></p>
<p class="MsoPlainText">> Dev mailing list <a href="mailto:Dev@ensembl.org"><span style="color:windowtext;text-decoration:none">Dev@ensembl.org</span></a><o:p></o:p></p>
<p class="MsoPlainText">> Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev">
<span style="color:windowtext;text-decoration:none">http://lists.ensembl.org/mailman/listinfo/dev</span></a><o:p></o:p></p>
<p class="MsoPlainText">> Ensembl Blog: <a href="http://www.ensembl.info/"><span style="color:windowtext;text-decoration:none">http://www.ensembl.info/</span></a><o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">_______________________________________________<o:p></o:p></p>
<p class="MsoPlainText">Dev mailing list <a href="mailto:Dev@ensembl.org"><span style="color:windowtext;text-decoration:none">Dev@ensembl.org</span></a><o:p></o:p></p>
<p class="MsoPlainText">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev">
<span style="color:windowtext;text-decoration:none">http://lists.ensembl.org/mailman/listinfo/dev</span></a><o:p></o:p></p>
<p class="MsoPlainText">Ensembl Blog: <a href="http://www.ensembl.info/"><span style="color:windowtext;text-decoration:none">http://www.ensembl.info/</span></a><o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">_______________________________________________<o:p></o:p></p>
<p class="MsoPlainText">Dev mailing list <a href="mailto:Dev@ensembl.org"><span style="color:windowtext;text-decoration:none">Dev@ensembl.org</span></a><o:p></o:p></p>
<p class="MsoPlainText">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev">
<span style="color:windowtext;text-decoration:none">http://lists.ensembl.org/mailman/listinfo/dev</span></a><o:p></o:p></p>
<p class="MsoPlainText">Ensembl Blog: <a href="http://www.ensembl.info/"><span style="color:windowtext;text-decoration:none">http://www.ensembl.info/</span></a><o:p></o:p></p>
</div>
</body>
</html>