<div dir="ltr">Quoting from the above link:<div><br></div><div>"<span style="color:rgb(85,85,85);font-family:'Luxi Sans',Helvetica,Arial,Geneva,sans-serif;font-size:12.8000001907349px;line-height:16px">1000 Genomes Phase 3 data is available from release 79 in GRCh37 cache files; simply use </span><a href="http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html#opt_gmaf" style="color:rgb(0,0,102);font-family:'Luxi Sans',Helvetica,Arial,Geneva,sans-serif;font-size:12.8000001907349px;line-height:16px">--gmaf</a><span style="color:rgb(85,85,85);font-family:'Luxi Sans',Helvetica,Arial,Geneva,sans-serif;font-size:12.8000001907349px;line-height:16px"> and/or </span><a href="http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html#opt_maf_1kg" style="color:rgb(0,0,102);font-family:'Luxi Sans',Helvetica,Arial,Geneva,sans-serif;font-size:12.8000001907349px;line-height:16px">--maf_1kg</a><span style="color:rgb(85,85,85);font-family:'Luxi Sans',Helvetica,Arial,Geneva,sans-serif;font-size:12.8000001907349px;line-height:16px"> to retrieve frequency data."</span></div></div><div class="gmail_extra"><br><div class="gmail_quote">On 25 March 2015 at 10:52, namchul ghim <span dir="ltr"><<a href="mailto:chulghim@gmail.com" target="_blank">chulghim@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>this guide is about GRCh38. but  my vcf file is GRCh37 version.</div><div>How can do it?</div><div><br></div><div><br></div></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Mar 25, 2015 at 6:12 PM, Will McLaren <span dir="ltr"><<a href="mailto:wm2@ebi.ac.uk" target="_blank">wm2@ebi.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hello,<div><br></div><div>We've prepared a short guide specifically for this, take a look:</div><div><br></div><div><a href="http://www.ensembl.org/info/docs/tools/vep/script/vep_example.html#1kg_p3" target="_blank">http://www.ensembl.org/info/docs/tools/vep/script/vep_example.html#1kg_p3</a><br></div><div><br></div><div>Regards</div><div><br></div><div>Will McLaren</div><div>Ensembl Variation</div></div><div class="gmail_extra"><br><div class="gmail_quote"><span>On 25 March 2015 at 06:21, namchul ghim <span dir="ltr"><<a href="mailto:chulghim@gmail.com" target="_blank">chulghim@gmail.com</a>></span> wrote:<br></span><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><span><div dir="ltr"><h4 style="color:rgb(102,102,102);margin:0px 0px 1em;font-size:12.8000001907349px;font-family:'Luxi Sans',Helvetica,Arial,Geneva,sans-serif">When i run vep v79, how can i add 1000Genomes Phase3 information ?</h4><div><br></div><div><br></div></div>
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