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Hi Namchul,<br>
<br>
The message may indicate missing results. Could you supply more
information on how you are using VEP? I assume you are using one of
the release79 caches? Do you have any examples of VCF lines
triggering the message?<br>
<br>
Thanks,<br>
<br>
Sarah<br>
<div class="moz-cite-prefix"><br>
On 09/04/2015 02:20, namchul ghim wrote:<br>
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<blockquote
cite="mid:20150409012115.CAE782302C5_525D40BB@hx-mx1.ebi.ac.uk"
type="cite">
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<div>I got the following error message during annotating whole
genome vcf file.</div>
<div>These messages doesn't affect the result. is it right?</div>
<div><br>
</div>
<div> <br>
</div>
<div>Use of uninitialized value in hash element at
/mnt/lustre/Tools/VEP/src/ensembl-tools-release-79/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/VariationFeature.pm
line 718.</div>
<div><br>
</div>
<div>Use of uninitialized value $stable_id in pattern match(//m)
at
/mnt/lustre/Tools/VEP/src/ensembl-tools-release-79/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm
line 670.</div>
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