<div dir="ltr">Thanks Magali<div><br></div><div>But I think you have not understtod my question.</div><div><br></div><div>Assume I want to download the databases to my local computer and use the perl API 79 to query the latest 79_37 database instead of the default 79_38<font size="3">. </font></div><div><font size="3">Previously, I just had to download the mysql tables corresponding to the api I was using to fetch the data correctly, however, now you have broken that link API->Underlying_assembly</font></div><div><font size="3"><br></font></div><div><font size="3">So how do I tell my scripts what database to query?</font></div><div><font size="3"><br></font></div><div><font size="3">My local sql will all be under the same port.</font></div><div><font size="3"><br></font></div><div><font size="3">Best regards</font></div><div><font size="3"><br></font></div><div><font size="3">Duarte</font></div><div><font size="3"><br></font></div><div><font size="3"><br></font></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><font style="background-color:rgb(255,255,255)" color="#999999">=========================<br> Duarte Miguel Paulo Molha <br></font><div><font style="background-color:rgb(255,255,255)" color="#999999"> <a href="http://about.me/duarte" target="_blank">http://about.me/duarte</a> <br>=========================</font></div></div></div>
<br><div class="gmail_quote">On 27 April 2015 at 17:01, mag <span dir="ltr"><<a href="mailto:mr6@ebi.ac.uk" target="_blank">mr6@ebi.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
Hi Duarte,<br>
<br>
The archive 75 website is still based on the release 75 API.<br>
<br>
For the dedicated GRCh37 website though, we have used a data freeze
from release 75 and have since been updating the website and
underlying databases along with the main release.<br>
The GRCh37 databases are available on our main MySQL server on port
3337 (instead of the default 3306 which will give you access to
GRCh38 databases)<br>
<br>
<br>
Hope that helps,<br>
Magali<div><div class="h5"><br>
<br>
<div>On 27/04/2015 16:56, Duarte Molha
wrote:<br>
</div>
</div></div><blockquote type="cite"><div><div class="h5">
<div dir="ltr">
<div>Dear developers</div>
<div><br>
</div>
<div>On your GRCh37 archive site you say this:</div>
<div><br>
</div>
<div>===========================</div>
<div><br>
</div>
<h2>About this archive</h2>
<p>This archive is based
on Ensembl Release 75 data, and gives continuing access to
human assembly GRCh37, as well as all our other release 75
species (data freeze March 2014) for comparative purposes.
Human variation and regulation data has since been updated in
March 2015.</p>
<p>The API and website
will be updated in tandem with the release of the main Ensembl
website (<b>currently version 79</b>), and we will also
periodically update this site with new data human, which will
be announced in this panel.</p>
<div><span>MySQL
dumps of human databases on the most recent schema version
are available on our</span><span> </span><a href="ftp://ftp.ensembl.org/pub/grch37/" target="_blank">FTP
site</a><span>.</span></div>
<div><br>
</div>
<div>=========================</div>
<div><br>
</div>
<div>It was my understanding that an API version was directly
linked to a specific assembly. So I thought that if I wanted
to query the latest GRCh37 assembly I would need to use the
api v75 and if I wanted to use a local database, I would
download the corresponding sql tables for that version.</div>
<div><br>
</div>
<div>However, according to this announcement, I can now use the
V79 api and query the old assembly... How is this accomplished
?</div>
<div>What you I have to do on my scripts to make sure I am
querying the 37 version even though I am using the latest API?</div>
<div><br>
</div>
<div>Sorry, I hope this is not a stupid question but I am a bit
confused.</div>
<div><br>
</div>
<div>Best regards</div>
<div><br>
</div>
<div>Duarte</div>
<div><br>
</div>
<div><br>
</div>
<br clear="all">
<div>
<div><font style="background-color:rgb(255,255,255)" color="#999999">=========================<br>
Duarte Miguel Paulo Molha <br>
</font>
<div><font style="background-color:rgb(255,255,255)" color="#999999"> <a href="http://about.me/duarte" target="_blank">http://about.me/duarte</a>
<br>
=========================</font></div>
</div>
</div>
</div>
<br>
<fieldset></fieldset>
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