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<div class="moz-cite-prefix">Hello Konrad,<br>
<br>
this is because on release 79 we replaced the old regulatory build
with the newer version (which we had released for GRCh38 in v76).<br>
<br>
There would definitely be some moving around of features as both
builds are very different in the way they are computed.<br>
<br>
Regards,<br>
<br>
Daniel<br>
<br>
On 5/21/15 5:28 AM, Konrad Karczewski wrote:<br>
</div>
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cite="mid:20150521042917.1CEAB132A40_55D5F1DB@hx-mx2.ebi.ac.uk"
type="cite">
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Hi Will, everyone,
<div class=""><br class="">
</div>
<div class="">Are RegulatoryFeature annotations expected to have
the same results in VEP v79 (GRCh37) as previous versions (e.g.
v77)? When annotating the ExAC VCF, the older versions included
many ENSR* annotations, but v79's do not (same command including
--everything both times). For instance, the following variant
used to overlap ENSR00000528767 but does not seem to in my most
recent version:</div>
<div class=""><br class="">
</div>
<div class="">1 13372 . G C</div>
<div class=""><br class="">
</div>
<div class="">Any idea why this might be happening? All other
annotations seem fine.<br class="">
<div class=""><br class="webkit-block-placeholder">
</div>
<div apple-content-edited="true" class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal;
orphans: auto; text-align: start; text-indent: 0px;
text-transform: none; white-space: normal; widows: auto;
word-spacing: 0px; -webkit-text-stroke-width: 0px;
word-wrap: break-word; -webkit-nbsp-mode: space;
-webkit-line-break: after-white-space;" class="">
<div style="color: rgb(0, 0, 0); font-family: Helvetica;
font-size: 12px; font-style: normal; font-variant: normal;
font-weight: normal; letter-spacing: normal; line-height:
normal; orphans: auto; text-align: start; text-indent:
0px; text-transform: none; white-space: normal; widows:
auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;"
class="">Thanks!<br class="Apple-interchange-newline">
-Konrad</div>
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