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Dear devs,<br>
<br>
I'm trying ensembl 79 VEP.<br>
<br>
This is my dummy input VCF: <a class="moz-txt-link-freetext" href="http://pastebin.com/kFKWH50q#">http://pastebin.com/kFKWH50q#</a><br>
<br>
I've cloned and installed API from github as always (this step is
repeated for variaton, funcgen and compara):<br>
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</pre>
<ul>
<li>git clone --branch release/79 <a
href="https://github.com/Ensembl/ensembl.git"
style="box-sizing: border-box; word-wrap: break-word;
text-decoration: underline; color: rgb(92, 53, 102);">https://github.com/Ensembl/ensembl.git</a>
ensembl_79</li>
</ul>
<p>PERL5LIB env variable is correctly pointing to the cloned API: <br>
</p>
<ul>
<li>echo $PERL5LIB <br>
/share/apps/local/bioperl-live:/share/apps/src/ensembl_79/modules:/share/apps/src/ensembl_79-compara/modules:/share/apps/src/ensembl_79-variation/modules:/share/apps/src/ensembl_79-functgenomics/modules</li>
</ul>
<p>However I'm getting a lot of errors I really don't understand. It
seems like a bug with API installation with me. If I change
$PERL5LIB variable to point to 75 API (previous version I was
using) I can't reproduce the errors VEP script works for this old
75 version.<br>
</p>
<p>I've been reading the docs again and I can't seen any additional
PERL library requirement.<br>
</p>
<p>Here's the error log: <a class="moz-txt-link-freetext" href="http://pastebin.com/VvQrkEQZ">http://pastebin.com/VvQrkEQZ</a><br>
</p>
<p><br>
Thank you!<br>
</p>
<p>Best regards,<br>
Guille.<br>
</p>
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