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Hi Will,<br>
Thanks for the quick answer! So if I want to match the
VEP (v80) results on Ensembl's data (ex: retrieving annotations or
xrefs ...etc), I should download the data from
<a class="moz-txt-link-freetext" href="ftp://ftp.ensembl.org/pub/grch37/release-80/">ftp://ftp.ensembl.org/pub/grch37/release-80/</a> right as there aren't
any public mysql server up with 'homo_sapiens_core_80_37' on
<a class="moz-txt-link-freetext" href="http://grch37.ensembl.org/info/data/mysql.html">http://grch37.ensembl.org/info/data/mysql.html</a> right?<br>
<br>
Best,<br>
Kirsley<br>
<br>
<div class="moz-cite-prefix">On 03/06/2015 10:22, Will McLaren
wrote:<br>
</div>
<blockquote
cite="mid:CAMVEDX0z+3SAcdbnJWhf0S8pN3UbFM1EybgrqX69ZMLMMzjQsg@mail.gmail.com"
type="cite">
<div dir="ltr">Hi Kirsley,
<div><br>
</div>
<div>The gene set is from Ensembl 75, but variation and
regulation data have been updated.</div>
<div><br>
</div>
<div>See <a moz-do-not-send="true"
href="http://grch37.ensembl.org/index.html">http://grch37.ensembl.org/index.html</a>
for more information.</div>
<div><br>
</div>
<div>Regards</div>
<div><br>
</div>
<div>Will McLaren</div>
<div>Ensembl Variation</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On 3 June 2015 at 09:17, Kirsley
CHENNEN <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:kchennen@unistra.fr" target="_blank">kchennen@unistra.fr</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
If I use the latest version of VEP (v80) and that I
specify that I want to use the genome version GRch37, which
data release is used? Ensembl 75? I meant between releases,
there are some definition of genes that changes (namely some
coordinates of genes, or ENSG identifiers (new, update,
delete)...).<br>
<br>
Best regards,<br>
Kirsley<br>
<br>
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</blockquote>
</div>
<br>
</div>
<br>
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<pre wrap="">_______________________________________________
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