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Yes it worked! Thanks!<br>
<br>
Best,<br>
Kirsley<br>
<br>
<br>
<br>
<br>
<div class="moz-cite-prefix">On 03/06/2015 10:42, Will McLaren
wrote:<br>
</div>
<blockquote
cite="mid:CAMVEDX1-yNrC++pLJDXpDPNy9Uz_VSne=D3nGvFJMAC2=MjhWg@mail.gmail.com"
type="cite">
<div dir="ltr">You can access the homo_sapiens_*_80_37 databases
on port 3337 of our public database server e.g.:
<div><br>
</div>
<div>mysql -<a moz-do-not-send="true"
href="http://hensembldb.ensembl.org">hensembldb.ensembl.org</a>
-P3337 -uanonymous</div>
<div><br>
</div>
<div>Will</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On 3 June 2015 at 09:37, Kirsley
CHENNEN <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:kchennen@unistra.fr" target="_blank">kchennen@unistra.fr</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000"> Hi Will,<br>
Thanks for the quick answer! So if I want to
match the VEP (v80) results on Ensembl's data (ex:
retrieving annotations or xrefs ...etc), I should download
the data from <a moz-do-not-send="true"
href="ftp://ftp.ensembl.org/pub/grch37/release-80/"
target="_blank">ftp://ftp.ensembl.org/pub/grch37/release-80/</a>
right as there aren't any public mysql server up with
'homo_sapiens_core_80_37' on <a moz-do-not-send="true"
href="http://grch37.ensembl.org/info/data/mysql.html"
target="_blank">http://grch37.ensembl.org/info/data/mysql.html</a>
right?<br>
<br>
Best,<br>
Kirsley
<div>
<div class="h5"><br>
<br>
<div>On 03/06/2015 10:22, Will McLaren wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">Hi Kirsley,
<div><br>
</div>
<div>The gene set is from Ensembl 75, but
variation and regulation data have been updated.</div>
<div><br>
</div>
<div>See <a moz-do-not-send="true"
href="http://grch37.ensembl.org/index.html"
target="_blank">http://grch37.ensembl.org/index.html</a>
for more information.</div>
<div><br>
</div>
<div>Regards</div>
<div><br>
</div>
<div>Will McLaren</div>
<div>Ensembl Variation</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On 3 June 2015 at 09:17,
Kirsley CHENNEN <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:kchennen@unistra.fr"
target="_blank">kchennen@unistra.fr</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0
0 0 .8ex;border-left:1px #ccc
solid;padding-left:1ex">Hi,<br>
If I use the latest version of VEP (v80)
and that I specify that I want to use the
genome version GRch37, which data release is
used? Ensembl 75? I meant between releases,
there are some definition of genes that
changes (namely some coordinates of genes, or
ENSG identifiers (new, update, delete)...).<br>
<br>
Best regards,<br>
Kirsley<br>
<br>
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