<div dir="ltr">You can access the homo_sapiens_*_80_37 databases on port 3337 of our public database server e.g.:<div><br></div><div>mysql -<a href="http://hensembldb.ensembl.org">hensembldb.ensembl.org</a> -P3337 -uanonymous</div><div><br></div><div>Will</div></div><div class="gmail_extra"><br><div class="gmail_quote">On 3 June 2015 at 09:37, Kirsley CHENNEN <span dir="ltr"><<a href="mailto:kchennen@unistra.fr" target="_blank">kchennen@unistra.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
Hi Will,<br>
Thanks for the quick answer! So if I want to match the
VEP (v80) results on Ensembl's data (ex: retrieving annotations or
xrefs ...etc), I should download the data from
<a href="ftp://ftp.ensembl.org/pub/grch37/release-80/" target="_blank">ftp://ftp.ensembl.org/pub/grch37/release-80/</a> right as there aren't
any public mysql server up with 'homo_sapiens_core_80_37' on
<a href="http://grch37.ensembl.org/info/data/mysql.html" target="_blank">http://grch37.ensembl.org/info/data/mysql.html</a> right?<br>
<br>
Best,<br>
Kirsley<div><div class="h5"><br>
<br>
<div>On 03/06/2015 10:22, Will McLaren
wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">Hi Kirsley,
<div><br>
</div>
<div>The gene set is from Ensembl 75, but variation and
regulation data have been updated.</div>
<div><br>
</div>
<div>See <a href="http://grch37.ensembl.org/index.html" target="_blank">http://grch37.ensembl.org/index.html</a>
for more information.</div>
<div><br>
</div>
<div>Regards</div>
<div><br>
</div>
<div>Will McLaren</div>
<div>Ensembl Variation</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On 3 June 2015 at 09:17, Kirsley
CHENNEN <span dir="ltr"><<a href="mailto:kchennen@unistra.fr" target="_blank">kchennen@unistra.fr</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
If I use the latest version of VEP (v80) and that I
specify that I want to use the genome version GRch37, which
data release is used? Ensembl 75? I meant between releases,
there are some definition of genes that changes (namely some
coordinates of genes, or ENSG identifiers (new, update,
delete)...).<br>
<br>
Best regards,<br>
Kirsley<br>
<br>
_______________________________________________<br>
Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a><br>
Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank">http://lists.ensembl.org/mailman/listinfo/dev</a><br>
Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a><br>
</blockquote>
</div>
<br>
</div>
<br>
<fieldset></fieldset>
<br>
<pre>_______________________________________________
Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a>
Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank">http://lists.ensembl.org/mailman/listinfo/dev</a>
Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a>
</pre>
</blockquote>
<br>
</div></div></div>
<br>_______________________________________________<br>
Dev mailing list <a href="mailto:Dev@ensembl.org">Dev@ensembl.org</a><br>
Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank">http://lists.ensembl.org/mailman/listinfo/dev</a><br>
Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a><br>
<br></blockquote></div><br></div>