<div dir="ltr">You can access the homo_sapiens_*_80_37 databases on port 3337 of our public database server e.g.:<div><br></div><div>mysql -<a href="http://hensembldb.ensembl.org">hensembldb.ensembl.org</a> -P3337 -uanonymous</div><div><br></div><div>Will</div></div><div class="gmail_extra"><br><div class="gmail_quote">On 3 June 2015 at 09:37, Kirsley CHENNEN <span dir="ltr"><<a href="mailto:kchennen@unistra.fr" target="_blank">kchennen@unistra.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
  
    
  
  <div bgcolor="#FFFFFF" text="#000000">
    Hi Will,<br>
                Thanks for the quick answer! So if I want to match the
    VEP (v80) results on Ensembl's data (ex: retrieving annotations or
    xrefs ...etc), I should download the data from
    <a href="ftp://ftp.ensembl.org/pub/grch37/release-80/" target="_blank">ftp://ftp.ensembl.org/pub/grch37/release-80/</a> right as there aren't
    any public mysql server up with 'homo_sapiens_core_80_37' on
    <a href="http://grch37.ensembl.org/info/data/mysql.html" target="_blank">http://grch37.ensembl.org/info/data/mysql.html</a> right?<br>
    <br>
    Best,<br>
    Kirsley<div><div class="h5"><br>
    <br>
    <div>On 03/06/2015 10:22, Will McLaren
      wrote:<br>
    </div>
    <blockquote type="cite">
      <div dir="ltr">Hi Kirsley,
        <div><br>
        </div>
        <div>The gene set is from Ensembl 75, but variation and
          regulation data have been updated.</div>
        <div><br>
        </div>
        <div>See <a href="http://grch37.ensembl.org/index.html" target="_blank">http://grch37.ensembl.org/index.html</a>
          for more information.</div>
        <div><br>
        </div>
        <div>Regards</div>
        <div><br>
        </div>
        <div>Will McLaren</div>
        <div>Ensembl Variation</div>
      </div>
      <div class="gmail_extra"><br>
        <div class="gmail_quote">On 3 June 2015 at 09:17, Kirsley
          CHENNEN <span dir="ltr"><<a href="mailto:kchennen@unistra.fr" target="_blank">kchennen@unistra.fr</a>></span>
          wrote:<br>
          <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
                If I use the latest version of VEP (v80) and that I
            specify that I want to use the genome version GRch37, which
            data release is used? Ensembl 75? I meant between releases,
            there are some definition of genes that changes (namely some
            coordinates of genes, or ENSG identifiers (new, update,
            delete)...).<br>
            <br>
            Best regards,<br>
            Kirsley<br>
            <br>
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          </blockquote>
        </div>
        <br>
      </div>
      <br>
      <fieldset></fieldset>
      <br>
      <pre>_______________________________________________
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</pre>
    </blockquote>
    <br>
  </div></div></div>

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<br></blockquote></div><br></div>