<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class="">We use CrossMap for our assembly converter tool - you can input VCF files, though it will take a long time with large amounts of data.</div><div class=""><br class=""></div><div class="">If you don’t want to use the online tool, you will need to download and install CrossMap (a Python script) and also obtain our chain files and FASTA files, which I think are available from the FTP site.</div><div class=""><br class=""></div><div class="">Cheers</div><div class=""><br class=""></div><div class="">Anne</div><div class=""><br class=""></div><br class=""><div class=""><blockquote type="cite" class=""><div class="">On 12 Jun 2015, at 09:27, namchul ghim <<a href="mailto:chulghim@gmail.com" class="">chulghim@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Really thanks..<div class=""><br class=""></div><div class="">If it is possible, can i get the liftOver tools and how to use ?</div><div class=""> (( GRCh37 -> GRCh38 ))</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On Fri, Jun 12, 2015 at 5:15 PM, Will McLaren <span dir="ltr" class=""><<a href="mailto:wm2@ebi.ac.uk" target="_blank" class="">wm2@ebi.ac.uk</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class=""><div class="">Hello,</div><div class=""><br class=""></div><div class="">Sorry, this is a bit hard to find on our FTP.</div><div class=""><br class=""></div><a href="ftp://ftp.ensembl.org/pub/grch37/release-79/variation/vcf/homo_sapiens/" target="_blank" class="">ftp://ftp.ensembl.org/pub/grch37/release-79/variation/vcf/homo_sapiens/</a><span class="HOEnZb"><font color="#888888" class=""><div class=""><br class=""></div><div class="">Will McLaren<br class="">Ensembl Variation<br class=""><div class=""><br class=""></div><div class=""><br class=""></div></div></font></span></div><div class="gmail_extra"><br class=""><div class="gmail_quote"><span class="">On 12 June 2015 at 05:44, namchul ghim <span dir="ltr" class=""><<a href="mailto:chulghim@gmail.com" target="_blank" class="">chulghim@gmail.com</a>></span> wrote:<br class=""></span><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class=""><div class="h5"><div dir="ltr" class="">I want to download 1KG.phase3.GRCh37.vcf.gz <div class="">Can i get it?</div><div class=""><br class=""></div><div class="">1KG.phase3.GRCh38.vcf.gz exist.</div><div class="">but I can't find GRCh37 version...</div><div class=""><br class=""></div><div class="">Thanks..</div></div>
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