<div dir="ltr">Thanks, we've seen a similar case before I believe.<div><br></div><div>We'll take a look at updating the code for our next release (changing consequence predicate code is a bit more involved than the usual bug fix).</div><div><br></div><div>Will</div></div><div class="gmail_extra"><br><div class="gmail_quote">On 13 July 2015 at 15:49, Konrad Karczewski <span dir="ltr"><<a href="mailto:konradk@broadinstitute.org" target="_blank">konradk@broadinstitute.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Hi Will/VEP,<div><br></div><div>Me again. We found a fairly exotic corner case variant (<a href="http://exac.broadinstitute.org/variant/1-204159611-CT-C" target="_blank">http://exac.broadinstitute.org/variant/1-204159611-CT-C</a>): it's annotated in VEP as a "frameshift" (confirmed it does the same in v80) that deletes the last base of a transcript, but actually results in a stop-retained variant, so I suppose in a sense be a synonymous-like variant?</div><div><div><br></div><div>
<div style="color:rgb(0,0,0);letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word"><div style="color:rgb(0,0,0);font-family:Helvetica;font-size:12px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px">Thanks!<span class="HOEnZb"><font color="#888888"><br>-Konrad</font></span></div></div>
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