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Hi Will,<br>
Am still having the same issue with the latest version
of the Convervation.pm plugin :<br>
<br>
2015-08-13 15:31:17 - Failed to instantiate plugin Conservation:
Failed to connect to compara database<br>
<br>
<br>
Do we have to the config for the database in the vep.ini file?<br>
<br>
# reconnect to DB without species param<br>
my $config = $self->{config};<br>
$reg->load_registry_from_db(<br>
-host => $config->{host},<br>
-user => $config->{user},<br>
-pass => $config->{password},<br>
-port => $config->{port},<br>
-db_version => $config->{db_version},<br>
-no_cache => $config->{no_slice_cache},<br>
);<br>
<br>
If that's so, what are the parameters for the GRCh37 human assembly?<br>
<br>
Regards<br>
Kirsley<br>
<br>
<br>
<div class="moz-cite-prefix">On 13/08/2015 14:46, Will McLaren
wrote:<br>
</div>
<blockquote
cite="mid:CAMVEDX36fjbVz=Nyp_Nv3e2iaL6+OR0a2O1ZTZrN7mRQFhZJ=g@mail.gmail.com"
type="cite">
<div dir="ltr">Hi Guillermo,
<div><br>
</div>
<div>Thanks for the report, I've pushed a fix to the plugin on
GitHub.</div>
<div><br>
</div>
<div>Regards</div>
<div><br>
</div>
<div>Will</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On 13 August 2015 at 12:36, Guillermo
Marco Puche <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:guillermo.marco@sistemasgenomicos.com"
target="_blank">guillermo.marco@sistemasgenomicos.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000066" bgcolor="#FFFFFF"> Dear devs,<br>
<br>
I'm using latest version of VEP Conservation plugin
available in github. However it's not working for me:<br>
<br>
2015-08-13 13:35:17 - Failed to instantiate plugin
Conservation: Failed to connect to compara database<br>
<br>
Is this a bug?<br>
<br>
Regards,<br>
Guillermo.<br>
<div><br>
</div>
</div>
<br>
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</blockquote>
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<br>
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