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Many thanks!<br>
<br>
Rodrigo<br>
<br>
<div class="moz-cite-prefix">On 08/24/2015 10:27 AM, Will McLaren
wrote:<br>
</div>
<blockquote
cite="mid:CAMVEDX1btNuH=b2FvU1--GpQ=KCcSeZSyOd=qKi0=GLDx+tDpA@mail.gmail.com"
type="cite">
<div dir="ltr">Hello again,
<div><br>
</div>
<div>This is now fixed on release/81; you can run INSTALL.pl to
pick up the fix.</div>
<div><br>
</div>
<div>Let me know if you are using an older version and I can
patch the fix there too.</div>
<div><br>
</div>
<div>Regards</div>
<div><br>
</div>
<div>Will</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On 20 August 2015 at 23:14, Rodrigo
Garcia <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:rgarcia@inmegen.gob.mx" target="_blank">rgarcia@inmegen.gob.mx</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">Hello!<br>
<br>
Creating json files is a great feature but I think I may
have found a bug on the <a moz-do-not-send="true"
href="http://variant_effect_predictor.pl" rel="noreferrer"
target="_blank">variant_effect_predictor.pl</a> script.<br>
<br>
Using the --json flag some -not all- of the objects exported
have the string ARRAY and some hash instead of an array on
pubmed and clin_sig fields.<br>
<br>
Like so: "pubmed":["ARRAY(0xf2b8178)"]<br>
<br>
or sometimes: "clin_sig":["ARRAY(0x14211470)"]<br>
<br>
Some entries are fine, with several pubmed IDs or different
clinical significances, all properly formatted in JSON.<br>
But not all.<br>
<br>
Cheers!<br>
<br>
Rodrigo<br>
<br>
<br>
<br>
P.S. Hi list! My name is Rodrigo, I do some bioinformatics
work for a mexican genomics institute. I'm a happy user of
VEP and other ensembl tools. Thanks, great software!<br>
<br>
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</blockquote>
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