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There is a docker image with Ensembl APIs:
<a class="moz-txt-link-freetext" href="https://github.com/gawbul/docker-ensembl">https://github.com/gawbul/docker-ensembl</a><br>
Note that is it not maintained by us !<br>
<br>
Matthieu<br>
<br>
<div class="moz-cite-prefix">On 27/08/15 11:31, Roy Storey wrote:<br>
</div>
<blockquote
cite="mid:55A28E01-A24C-440E-BDDC-FDBA81503D54@gmail.com"
type="cite">
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<div class="">Lurking in the background here, I’m wondering if
there any plans to move to a docker based distribution of these?</div>
<div class=""><br class="">
</div>
<div class="">Regards</div>
<div class="">Roy</div>
<div class=""><br class="">
<div>
<blockquote type="cite" class="">
<div class="">On 27/08/2015, at 22:01, Andrew Yates <<a
moz-do-not-send="true" href="mailto:ayates@ebi.ac.uk"
class=""><a class="moz-txt-link-abbreviated" href="mailto:ayates@ebi.ac.uk">ayates@ebi.ac.uk</a></a>> wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
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charset=windows-1252" class="">
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space;" class="">
<div apple-content-edited="true" class="">Hi G,
</div>
<div apple-content-edited="true" class=""><br class="">
</div>
<div apple-content-edited="true" class="">We've recently
been experimenting with automating our VM builds and
this has brought up an interesting issue when we have
multiple Ensembl virtual machine appliances imported
into the same VirtualBox infrastructure. This
manifested itself as us being unable to SSH onto the
running machine. A quick solution is:</div>
<div apple-content-edited="true" class=""><br class="">
</div>
<div apple-content-edited="true" class="">
<div apple-content-edited="true" class="">sudo rm
/etc/udev/rules.d/70-persistent-net.rules</div>
<div apple-content-edited="true" class="">sudo mkdir
/etc/udev/rules.d/70-persistent-net.rules</div>
<div apple-content-edited="true" class=""><br class="">
</div>
<div apple-content-edited="true" class="">The problem
is that Ubuntu remembers what MAC address it was
assigned and writes this to the persistent rules
file. VirtualBox, when it imports an appliance, will
attempt to assign the VM the MAC address it was
packaged with but will also check for MAC address
collisions. When there is a collision VirtualBox
assigns a new MAC address to the new appliance.
Ubuntu is now confused and refuses to interface with
the external network.</div>
<div apple-content-edited="true" class=""><br class="">
</div>
<div apple-content-edited="true" class="">Replacing
the persistent rules file with a directory prevents
Ubuntu from remembering as it's not possible to
write a line to directory :).</div>
<div apple-content-edited="true" class=""><br class="">
</div>
<div apple-content-edited="true" class="">There's more
information available from <a moz-do-not-send="true"
href="https://github.com/mitchellh/packer/issues/866" class="">https://github.com/mitchellh/packer/issues/866</a> and
you can see a shell script version of this solution
with Chef's bento project at <a
moz-do-not-send="true"
href="https://github.com/chef/bento/blob/master/scripts/ubuntu/networking.sh"
class=""><a class="moz-txt-link-freetext" href="https://github.com/chef/bento/blob/master/scripts/ubuntu/networking.sh">https://github.com/chef/bento/blob/master/scripts/ubuntu/networking.sh</a></a>.</div>
<div apple-content-edited="true" class=""><br class="">
</div>
<div apple-content-edited="true" class="">We are going
to put this step into our VM deployment SOP to make
sure the problem doesn't arise again</div>
<div apple-content-edited="true" class=""><br class="">
</div>
<div apple-content-edited="true" class="">Hope this
helps,</div>
<div apple-content-edited="true" class=""><br class="">
</div>
<div apple-content-edited="true" class="">Andy</div>
</div>
<br class="">
<div class="">
<blockquote type="cite" class="">
<div class="">On 27 Aug 2015, at 09:06, mag <<a
moz-do-not-send="true"
href="mailto:mr6@ebi.ac.uk" class=""><a class="moz-txt-link-abbreviated" href="mailto:mr6@ebi.ac.uk">mr6@ebi.ac.uk</a></a>>
wrote:</div>
<br class="Apple-interchange-newline">
<div class="">
<meta content="text/html; charset=windows-1252"
http-equiv="Content-Type" class="">
<div bgcolor="#FFFFFF" text="#000000" class=""> Hi
G,<br class="">
<br class="">
I just tested the latest VM on my Mac,
downloading a fresh copy, and had no
connectivity issue.<br class="">
Do you get any error messages?<br class="">
<br class="">
I can resize the window, but the block inside
does not change, we will look into how to fix
this for next release.<br class="">
<br class="">
As for GRCh37, you simply need to replace the
default 3306 port to 3337 to connect to the 81
release of GRCh37 databases.<br class="">
<br class="">
<br class="">
Regards,<br class="">
Magali<br class="">
<br class="">
<div class="moz-cite-prefix">On 26/08/2015
20:27, Genomeo Dev wrote:<br class="">
</div>
<blockquote
cite="mid:20150826192730.19CFE13444F_5DE1322B@hx-mx2.ebi.ac.uk"
type="cite" class="">
<div dir="ltr" class="">Dear all,
<div class=""><br class="">
</div>
<div class="">I am using a MAC and I have
the following questions:</div>
<div class=""><br class="">
</div>
<div class="">- When loading the latest
ensembl VM 81 into virtual box, it does
not seem to be able to connect to the
network and also the session can not be
resized to fit the monitor. I do not have
such issues with VM 75 for example.</div>
<div class="">- If I want to use grch37 in
the latest VM (81), what is the latest
folder ensembl-api-folder to use?<br
class="" clear="all">
<div class=""><br class="">
</div>
<div class="">Thanks,</div>
<div class=""><br class="">
</div>
-- </div>
<div class="">
<div class="gmail_signature">
<div dir="ltr" class="">G.</div>
</div>
</div>
</div>
<br class="">
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<br class="">
<pre class="" wrap="">_______________________________________________
Dev mailing list <a moz-do-not-send="true" class="moz-txt-link-abbreviated" href="mailto:Dev@ensembl.org">Dev@ensembl.org</a>
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Ensembl Blog: <a moz-do-not-send="true" class="moz-txt-link-freetext" href="http://www.ensembl.info/">http://www.ensembl.info/</a>
</pre>
</blockquote>
<br class="">
</div>
_______________________________________________<br
class="">
Dev mailing list <a moz-do-not-send="true"
href="mailto:Dev@ensembl.org" class="">Dev@ensembl.org</a><br
class="">
Posting guidelines and subscribe/unsubscribe info:
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href="http://lists.ensembl.org/mailman/listinfo/dev"
class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br
class="">
Ensembl Blog: <a moz-do-not-send="true"
href="http://www.ensembl.info/" class="">http://www.ensembl.info/</a><br
class="">
</div>
</blockquote>
</div>
<br class="">
</div>
_______________________________________________<br
class="">
Dev mailing list <a moz-do-not-send="true"
href="mailto:Dev@ensembl.org" class="">Dev@ensembl.org</a><br
class="">
Posting guidelines and subscribe/unsubscribe info: <a
moz-do-not-send="true"
href="http://lists.ensembl.org/mailman/listinfo/dev"
class=""><a class="moz-txt-link-freetext" href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a></a><br
class="">
Ensembl Blog: <a moz-do-not-send="true"
href="http://www.ensembl.info/" class="">http://www.ensembl.info/</a><br
class="">
</div>
</blockquote>
</div>
<br class="">
</div>
<br>
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<br>
<pre wrap="">_______________________________________________
Dev mailing list <a class="moz-txt-link-abbreviated" href="mailto:Dev@ensembl.org">Dev@ensembl.org</a>
Posting guidelines and subscribe/unsubscribe info: <a class="moz-txt-link-freetext" href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a>
Ensembl Blog: <a class="moz-txt-link-freetext" href="http://www.ensembl.info/">http://www.ensembl.info/</a>
</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Matthieu Muffato, Ph.D.
Ensembl Compara and TreeFam Project Leader
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus, Hinxton
Cambridge, CB10 1SD, United Kingdom
Room A3-145
Phone + 44 (0) 1223 49 4631
Fax + 44 (0) 1223 49 4468</pre>
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