<div dir="ltr">Correct, yes, you can assume they are the same unless there are a "-" separated pair of coords.<div><br></div><div>Will</div></div><div class="gmail_extra"><br><div class="gmail_quote">On 8 September 2015 at 13:35, Guillermo Marco Puche <span dir="ltr"><<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank">guillermo.marco@sistemasgenomicos.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000066">
Ok I'm sorry I just found a record where I obtain start-end
position. Forget the question.<br>
I can assume that start/end position is the same if only one
coordinate is found in field.<br>
<br>
Regards,<br>
Guillermo.<div><div class="h5"><br>
<br>
<div>On 08/09/15 14:30, Guillermo Marco
Puche wrote:<br>
</div>
</div></div><blockquote type="cite"><div><div class="h5">
Hello,<br>
<br>
Is it possible to retrieve <b>cds_start</b> and <b>cds_end</b>
positions from CDS_position field in VEP when using VCF as output
format?<br>
I would like to get start/end also for cdna and protein.<br>
<br>
In VCF output I see a unique coordiante in those fields (<b>CDS_position,
Protein_position and cDNA_position</b>) however in <a href="http://www.ensembl.org/info/docs/tools/vep/vep_formats.html#output" target="_blank"></a><a href="http://www.ensembl.org/info/docs/tools/vep/vep_formats.html#output" target="_blank">http://www.ensembl.org/info/docs/tools/vep/vep_formats.html#output</a>
I can see start/end (at least for JSON output).<br>
<br>
Thank you!<br>
<br>
Regards,<br>
Guillermo.<br>
<br>
<fieldset></fieldset>
<br>
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