<div dir="ltr">Hi David,<div><br></div><div>Sorry to hear you've been having problems. It's not clear to me from Google searching the error you're seeing what could be the cause; it seems there is some particular issue with your version of the Perl Archive module.</div><div><br></div><div>It is possible to do the installation steps performed by the VEP installer manually.</div><div><br></div><div>1) Install API and BioPerl: <a href="http://www.ensembl.org/info/docs/api/api_git.html">http://www.ensembl.org/info/docs/api/api_git.html</a> (follow the instructions for setting up a specific version of the API)</div><div><br></div><div>2) Install the cache: <a href="http://e77.ensembl.org/info/docs/tools/vep/script/vep_cache.html#pre">http://e77.ensembl.org/info/docs/tools/vep/script/vep_cache.html#pre</a></div><div><br></div><div>3) (optional) set up a cache file: <a href="http://e77.ensembl.org/info/docs/tools/vep/script/vep_cache.html#fasta">e77.ensembl.org/info/docs/tools/vep/script/vep_cache.html#fasta</a></div><div><br></div><div>Regards</div><div><br></div><div>Will McLaren</div><div>Ensembl Variation</div></div><div class="gmail_extra"><br><div class="gmail_quote">On 29 September 2015 at 22:53, Nicolas Thierry-Mieg <span dir="ltr"><<a href="mailto:Nicolas.Thierry-Mieg@imag.fr" target="_blank">Nicolas.Thierry-Mieg@imag.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
<br>
works here on centos 6, but I avoid CPAN as much as possible and use the distro-provided perl-Archive-Extract-0.38-141.el6.x86_64 .<br>
<br>
HTH<span class=""><br>
<br>
<br>
On 09/29/2015 05:23 PM, Murphy, David wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi All<br>
<br>
We’ve been trying to install VEP 77<br>
(<a href="https://github.com/Ensembl/ensembl-tools/archive/release/77.zip" rel="noreferrer" target="_blank">https://github.com/Ensembl/ensembl-tools/archive/release/77.zip</a>) in<br>
order to replicate results from a previous analysis.<br>
<br>
<br>
We’re running perl v5.10.1 on Red Hat Enterprise Linux Server release<br>
6.6 (Santiago)<br>
<br>
sh-4.1# perl -version<br>
<br>
This is perl, v5.10.1 (*) built for x86_64-linux-thread-multi<br>
<br>
<br>
When we run Install.pl we get the error<br>
<br>
<br>
sh-4.1# perl INSTALL.pl<br>
<br>
</blockquote></span>
<snip><span class=""><br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
- unpacking ./Bio/tmp/ensembl.zip<br>
<br>
Key 'archive' is of invalid type for Archive::Extract::new provided by<br>
main::unpack_arch at /usr/share/perl5/Archive/Extract.pm line 270.<br>
<br>
Can't call method "extract" on an undefined value at INSTALL.pl line 905.<br>
<br>
<br>
The file ensembl.zip is downloaded and appears to be a valid zip<br>
archive and can be extracted manually.<br>
<br>
The perl core module Archive::Extract appears to be there.<br>
<br>
Package namespace installed latest in CPAN file<br>
<br>
Algorithm::Diff 1.1903 1.1903<br>
TYEMQ/Algorithm-Diff-1.1903.tar.gz<br>
<br>
App::cpanminus 1.7039 1.7039<br>
MIYAGAWA/App-cpanminus-1.7039.tar.gz<br>
<br>
Archive::Extract 0.74 0.76<br>
BINGOS/Archive-Extract-0.76.tar.gz<br>
<br>
Archive::Zip 1.51 1.53 PHRED/Archive-Zip-1.53.tar.gz<br>
<br>
Attribute::Handlers 0.85 0.99<br>
RJBS/Attribute-Handlers-0.99.tar.gz<br>
<br>
<br>
We also tried with the latest version of the installer to try to<br>
diagnose the problem but we got the same error.<br>
<br>
Any ideas for what might be wrong?<br>
<br>
Regards<br>
David<br>
</blockquote>
<br>
<br></span>
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</blockquote></div><br></div>