<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40"><head><meta http-equiv=Content-Type content="text/html; charset=utf-8"><meta name=Generator content="Microsoft Word 14 (filtered medium)"><!--[if !mso]><style>v\:* {behavior:url(#default#VML);}
o\:* {behavior:url(#default#VML);}
w\:* {behavior:url(#default#VML);}
.shape {behavior:url(#default#VML);}
</style><![endif]--><style><!--
/* Font Definitions */
@font-face
{font-family:"Cambria Math";
panose-1:2 4 5 3 5 4 6 3 2 4;}
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
@font-face
{font-family:Tahoma;
panose-1:2 11 6 4 3 5 4 4 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0in;
margin-bottom:.0001pt;
font-size:12.0pt;
font-family:"Times New Roman","serif";}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:blue;
text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
{mso-style-priority:99;
color:purple;
text-decoration:underline;}
p.MsoAcetate, li.MsoAcetate, div.MsoAcetate
{mso-style-priority:99;
mso-style-link:"Balloon Text Char";
margin:0in;
margin-bottom:.0001pt;
font-size:8.0pt;
font-family:"Tahoma","sans-serif";}
span.apple-tab-span
{mso-style-name:apple-tab-span;}
span.EmailStyle18
{mso-style-type:personal-reply;
font-family:"Calibri","sans-serif";
color:#1F497D;}
span.BalloonTextChar
{mso-style-name:"Balloon Text Char";
mso-style-priority:99;
mso-style-link:"Balloon Text";
font-family:"Tahoma","sans-serif";}
.MsoChpDefault
{mso-style-type:export-only;
font-size:10.0pt;}
@page WordSection1
{size:8.5in 11.0in;
margin:1.0in 1.0in 1.0in 1.0in;}
div.WordSection1
{page:WordSection1;}
--></style><!--[if gte mso 9]><xml>
<o:shapedefaults v:ext="edit" spidmax="1026" />
</xml><![endif]--><!--[if gte mso 9]><xml>
<o:shapelayout v:ext="edit">
<o:idmap v:ext="edit" data="1" />
</o:shapelayout></xml><![endif]--></head><body lang=EN-US link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Dear Denise and the Ensembl Genomes team,<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Thanks a lot for your efforts. <o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>I tried to access the new data on MySQL database at mysql-eg-publicsql.ebi.ac.uk:4157 , but connection was repeatedly lost at the very first step. Too many connections? The server under update? <o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Please, suggest when we may hope to access new data…<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Thanks a lot<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Dmitry Kuznetsov<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>+41 (21) 692-40-62<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><a href="mailto:Dmitry.Kuznetsov@isb-sib.ch"><span style='color:blue'>Dmitry.Kuznetsov@isb-sib.ch</span></a><o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><a href="http://www.isb-sib.ch/"><span style='color:blue'>www.isb-sib.ch</span></a><o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><img border=0 width=250 height=135 id="Picture_x0020_1" src="cid:image003.png@01D10842.6CCD4270" alt="https://www.isb-sib.ch/galleries/xmax-children-2013/asdfjhaskjhiuz3124kjhaskjh231487sdfjoasidfjaohj3487cskdjksh35sdjsk34921387432kj4nh123k09as8dasdfaskdfhaskdjfhksh2341kh/sib_logo.png"><o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><div><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in'><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> dev-bounces@ensembl.org [mailto:dev-bounces@ensembl.org] <b>On Behalf Of </b>Denise Carvalho-Silva<br><b>Sent:</b> Friday, October 16, 2015 17:23<br><b>To:</b> dev@ensembl.org<br><b>Subject:</b> [ensembl-dev] Ensembl Genomes release 29 is out!<o:p></o:p></span></p></div></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>Dear all,<br><br>We are delighted to announce that the latest update of Ensembl Genomes has been released.<br><br>Highlights of this release include:<o:p></o:p></p><div><p class=MsoNormal><br><span class=apple-tab-span> </span>• Pairwise alignments for more than 50 plant genomes including potato and tomato, cacao and grape, and several Oryza sp<o:p></o:p></p><div><p class=MsoNormal><span class=apple-tab-span> </span>• Newly available genomes from INSDC into our ever expanding Protists and Fungi divisions<o:p></o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>• Cross-references of genes in Fungi and Protists to the Pathogen – Host Interaction Database (PHI-base)<o:p></o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>• Additional 6,806 bacterial genomes imported from <a href="http://www.ebi.ac.uk/ena">ENA</a><o:p></o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>• Protein domain information from InterProScan (version 5.14-53.0)<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><p class=MsoNormal>Genomic alignments<br><br><span class=apple-tab-span> </span>New pairwise alignments have been extended to additional plant genomes and can be viewed in our <a href="http://plants.ensembl.org/Solanum_tuberosum/Location/Multi?db=core;g=PGSC0003DMG400023754;r=1:80939326-80946811;r1=1:92723872-92731357:1;s1=Solanum_lycopersicum">browser</a> website. <o:p></o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>The <a href="http://plants.ensembl.org/Solanum_tuberosum/Location/Compara_Alignments?align=9420;db=core;g=PGSC0003DMG400023754;r=1:80940360-80945890">alignment text</a> can be downloaded in different file formats.<o:p></o:p></p></div><div><div><p class=MsoNormal><span class=apple-tab-span> </span>Whole genome alignments can also be retrieved via our FTP or programmatically using our APIs.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>View the complete list of <a href="http://plants.ensembl.org/compara_analyses.html">genomic alignments</a> available in this new release.<o:p></o:p></p></div></div><div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Marking your favourite region, gene, exon, or variant<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>You can now mark a selected region when browsing the Ensembl Genomes websites. <o:p></o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>Drag and select your favourite gene and use the pop-up window to mark it. You can also click on the gene itself to mark the location of it.<o:p></o:p></p></div></div><div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Other news<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>Updated BioMart: Protists, Metazoa, Fungi and Plants<span class=apple-tab-span> </span><o:p></o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>Updated <a href="http://ensemblgenomes.org/info/data/peptide_compara">peptide comparative genomics</a><o:p></o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>New assemblies and annotations for existing fungal species<o:p></o:p></p></div><div><p class=MsoNormal><span class=apple-tab-span> </span>Gene families available in Protists<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>A complete list of the changes can be found on the <a href="http://ensemblgenomes.org/info/release-notes/29">Ensembl Genomes</a> website.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Any questions or comments? <a href="mailto:helpdesk@ensemblgenomes.org">Get in touch</a>.<o:p></o:p></p></div></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><div><p class=MsoNormal>Best wishes,<o:p></o:p></p></div><div><p class=MsoNormal>Denise and the Ensembl Genomes team<o:p></o:p></p></div><div><p class=MsoNormal><a href="https://twitter.com/ensemblgenomes"><span style='color:#0433FF'>@ensemblgenomes</span></a><o:p></o:p></p></div></div></div></body></html>