<html><head></head><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px"><div id="yui_3_16_0_1_1447781830004_5335"><span id="yui_3_16_0_1_1447781830004_5336">You can see what introns are removed, and look at the remaining exons of mrna. The border's base sequence of splice junctions are important, and how much you pad and track a search sequence during an event comparison. </span></div> <br><div class="qtdSeparateBR"><br><br></div><div class="yahoo_quoted" style="display: block;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div dir="ltr"> <font face="Arial" size="2"> On Thursday, November 5, 2015 12:00 PM, Greg Slodkowicz <gregs@ebi.ac.uk> wrote:<br> </font> </div> <br><br> <div class="y_msg_container"><div id="yiv4764839323"><div dir="ltr">Dear all,<div>I'm working with a large (>500K) dataset of cancer mutations, all of which fall in coding regions. In the format I was given, the mutated positions are given as genomic (rather than CDS) coordinates. I noticed that the Ensembl REST API has a feature to map from protein to genomic coordinates (<a href="http://rest.ensembl.org/documentation/info/assembly_translation" target="_blank" rel="nofollow">http://rest.ensembl.org/documentation/info/assembly_translation</a>) but apparently not the other way round. What would be the simplest way to perform this kind of mapping?</div><div><br></div><div>Many thanks,<br>Greg</div></div></div><br>_______________________________________________<br>Dev mailing list <a href="mailto:Dev@ensembl.org" ymailto="mailto:Dev@ensembl.org">Dev@ensembl.org</a><br>Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank">http://lists.ensembl.org/mailman/listinfo/dev</a><br>Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a><br><br><br></div> </div> </div> </div></div></body></html>