<html><body style="font-family: 'Helvetica Neue',Helvetica,Arial,sans-serif; font-size: 12px;">Thanks very much Matthieu<br><br><blockquote><br>----- Original Message -----<br><div style="width:100%;background:rgb(228,228,228);"><div style="font-weight:bold;">From:</div> "Ensembl developers list" <dev@ensembl.org></div><br><div style="font-weight:bold;">To:</div>"Ensembl developers list" <dev@ensembl.org><br><div style="font-weight:bold;">Cc:</div><br><div style="font-weight:bold;">Sent:</div>Thu, 10 Mar 2016 09:16:31 +0000<br><div style="font-weight:bold;">Subject:</div>Re: [ensembl-dev] using REST to get EPO multispecies alignment<br><br><br>
Hi Matthew<br><br>
There is a bug on <br>
http://rest.ensembl.org/documentation/info/compara_species_sets . <br>
"species_set_group" shouldn't be empty.<br><br>
In your case, the group would be "mammals", and <br>
http://rest.ensembl.org/alignment/region/homo_sapiens/8:144276224-144276304?content-type=application/json;aligned=0&method=EPO&species_set_group=mammals <br>
works<br><br>
In the meantime, if you follow the link from any multiple alignment on <br>
this page http://www.ensembl.org/info/genome/compara/analyses.html#pecan <br>
the stats page will give you the name of the species-set<br><br>
Matthieu<br><br>
On 10/03/16 08:54, mhobbs_science@optusnet.com.au wrote:<br>
> Hi,<br>
><br>
> I am trying to retrieve an EPO multispecies alignment using the REST API<br>
> (http://rest.ensembl.org/documentation/info/genomic_alignment_region).<br>
><br>
> The example on this page<br>
> (http://rest.ensembl.org/documentation/info/compara_species_sets) gives<br>
> allowable values for |the "species_set_group" parameter and I would like<br>
> to use "17 eutherian mammals EPO".<br>
><br>
> This is what<br>
><br>
> ~: wget<br>
> 'http://rest.ensembl.org/alignment/region/homo_sapiens/8:144276224-144276304?content-type=application/json;aligned=0&method=EPO&species_set_group=17<br>
> eutherian mammals EPO' -O -<br>
> --2016-03-10 19:50:30--<br>
> http://rest.ensembl.org/alignment/region/homo_sapiens/8:144276224-144276304?content-type=application/json;aligned=0&method=EPO&species_set_group=17%20eutherian%20mammals%20EPO<br>
> Resolving rest.ensembl.org (rest.ensembl.org)... 193.62.54.30<br>
> Connecting to rest.ensembl.org (rest.ensembl.org)|193.62.54.30|:80...<br>
> connected.<br>
> HTTP request sent, awaiting response... 400 Bad Request<br>
> 2016-03-10 19:50:33 ERROR 400: Bad Request.<br>
> |<br>
><br>
> What am I doing wrong? Thanks for any suggestions.<br>
><br>
> Matthew<br><br>
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