<div dir="ltr">Hi Guillermo,<div><br></div><div>The data you refer to has been retracted from the Ensembl core database while we resolve some issues with external reference mapping between Ensembl and MIM.</div><div><br></div><div>You should be able to access the same annotations via the variation API, using phenotype features. [1] shows an example fetching via a variation object, but you can also query by gene [2].</div><div><br></div><div>Hope that helps</div><div><br></div><div>Will McLaren</div><div>Ensembl Variation</div><div><br></div><div>[1] <a href="http://www.ensembl.org/info/docs/api/variation/variation_tutorial.html#phenotype">http://www.ensembl.org/info/docs/api/variation/variation_tutorial.html#phenotype</a></div><div>[2] <a href="http://www.ensembl.org/info/docs/Doxygen/variation-api/classBio_1_1EnsEMBL_1_1Variation_1_1DBSQL_1_1PhenotypeFeatureAdaptor.html#aee2a195b2f6f19952f562511d3ce1a72">http://www.ensembl.org/info/docs/Doxygen/variation-api/classBio_1_1EnsEMBL_1_1Variation_1_1DBSQL_1_1PhenotypeFeatureAdaptor.html#aee2a195b2f6f19952f562511d3ce1a72</a></div></div><div class="gmail_extra"><br><div class="gmail_quote">On 4 April 2016 at 11:46, Guillermo Marco Puche <span dir="ltr"><<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank">guillermo.marco@sistemasgenomicos.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
  

    
  
  <div text="#000066" bgcolor="#FFFFFF">
    Dear devs,<br>
    <br>
    Up to VEP version 83 I was using the following code in a plugin to
    retrieve gene OMIM related information.<br>
    <br>
    
        my @db_entries = @{$gene->get_all_DBEntries()};<br>
        foreach my $db_entry(@db_entries){<br>
            if ($db_entry->dbname eq "MIM_GENE"){<br>
                $mim_id = $db_entry->primary_id;<br>
            }<br>
            if ($db_entry->dbname eq "MIM_MORBID"){<br>
                push(@mim_morbid_ids, $db_entry->primary_id);<br>
            }<br>
        }<br>
    <br>
    However since I've updated to VEP 84 I don't get any MIM_MORBID
    db_entry associated to any gene. Has this been removed or changed
    location?<br>
    <br>
    Best regards,<br>
    Guillermo.<br>
    <br>
  </div>

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<br></blockquote></div><br></div>