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<p class=""><span class="">Hi Ensembl team,</span></p><p class=""><span class="">I have installed VEP script release 84 and found the error below when running it. Your help will be appreciated.</span></p><p class=""><span class="">Thanks,</span></p><p class="">G.<br></p><p class=""><span class=""><b>[ggaw84@hpclogin2 variant_annotation]$ ./<a href="http://ping_ensembl_v84.pl">ping_ensembl_v84.pl</a> </b></span></p><p class=""><span class=""><b>








</b></span></p><p class=""><span class="">Installation is good. Connection to Ensembl works and you can query the human core database</span></p><p class=""><span class=""><b>[ggaw84@hpclogin2 variant_annotation]$ ./<a href="http://variant_effect_predictor_v84.pl">variant_effect_predictor_v84.pl</a> -i example_GRCh38.vcf --database</b></span></p>
<p class=""><span class="">Bareword found where operator expected at ./<a href="http://variant_effect_predictor_v84.pl">variant_effect_predictor_v84.pl</a> line 997, near "s/\_$//r"</span></p>
<p class=""><span class="">syntax error at ./<a href="http://variant_effect_predictor_v84.pl">variant_effect_predictor_v84.pl</a> line 997, near "s/\_$//r"</span></p>
<p class=""><span class="">Execution of ./<a href="http://variant_effect_predictor_v84.pl">variant_effect_predictor_v84.pl</a> aborted due to compilation errors.</span></p>
<p class=""><span class=""><b>[ggaw84@hpclogin2 variant_annotation]$ grep -n . <a href="http://variant_effect_predictor_v81.pl">variant_effect_predictor_v81.pl</a> | grep -b5 -a5 '^997'</b></span></p>
<p class=""><span class="">992:    }</span></p>
<p class=""><span class="">993:    </span></p>
<p class=""><span class="">994:    # warn user DB will be used for SIFT/PolyPhen/HGVS/frequency/LRG</span></p>
<p class=""><span class="">995:    if(defined($config->{cache})) {</span></p>
<p class=""><span class="">996:        </span></p>
<p class=""><span class="">997:        # these two def depend on DB</span></p>
<p class=""><span class="">998:        foreach my $param(grep {defined $config->{$_}} qw(hgvs lrg check_sv check_ref)) {</span></p>
<p class=""><span class="">999:            debug("INFO: Database will be accessed when using --$param") unless defined($config->{quiet}) or ($param =~ /hgvs|check_ref/ and defined($config->{fasta}));</span></p>
<p class=""><span class="">1000:        }</span></p>
<p class=""><span class="">1001:        </span></p>
<p class=""><span class="">1002:        debug("INFO: Database will be accessed when using --check_frequency with population ".$config->{freq_pop}) if !defined($config->{quiet}) and defined($config->{check_frequency}) && $config->{freq_pop} !~ /1kg.*(all|afr|amr|asn|eur)/i;</span></p><div><br></div>
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