<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class="">Hi Will,</div><div class=""><br class=""></div><div class="">Weird .. let me try to dig some more on this end.</div><div class=""><br class=""></div><div class="">Haven't tried local downloads yet, since that's a very undesirable path for usage.</div><div class=""><br class=""></div><div class="">Thanks,</div><div class=""><br class=""></div><div class="">Andrew</div><br class=""><div><blockquote type="cite" class=""><div class="">On Jul 11, 2016, at 10:44 AM, Will McLaren <<a href="mailto:wm2@ebi.ac.uk" class="">wm2@ebi.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Hi again,<div class=""><br class=""></div><div class="">I can't get the script to recreate the issue at my end.</div><div class=""><br class="">I'm surprised you're getting that message as the script is querying only one chromosome, so it should only be opening one (at most two) VCFs concurrently.</div><div class=""><br class=""></div><div class="">I don't know what's happening underneath our API layer, but my guess would be some other process (possibly zombie?) has an open connection to our FTP site. It may also be there's some per-IP allowance that is being violated somehow?</div><div class=""><br class=""></div><div class="">In any case have you tried downloading the VCFs locally?</div><div class=""><br class=""></div><div class="">Cheers</div><div class=""><br class=""></div><div class="">Will</div><div class="gmail_extra"><br class=""><div class="gmail_quote">On 11 July 2016 at 14:52, <span dir="ltr" class=""><<a href="mailto:andrew126@mac.com" target="_blank" class="">andrew126@mac.com</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word" class=""><div class="">Hi,</div><div class=""><br class=""></div><div class="">In case it helps to debug this issue, I've reattached the perl script that throws "too many connection" errors .. even with the release/84 code fix.</div><div class=""><br class=""></div><div class="">Many thanks,</div><div class=""><div class="h5"><div class=""><br class=""></div><div class="">Andrew</div><div class=""><br class=""></div><div class=""><div class="">use strict;</div><div class="">$|=1;</div><div class="">use IPC::Run;</div><div class="">use Bio::EnsEMBL::Registry;</div><div class="">use Bio::EnsEMBL::ApiVersion; </div><div class="">printf( "The API version used is %s\n", software_version() ); </div><div class=""><br class=""></div><div class="">my $registry = 'Bio::EnsEMBL::Registry';</div><div class="">$registry->load_all();</div><div class="">$registry->set_reconnect_when_lost();</div><div class="">$registry->load_registry_from_db(</div><div class=""> -host => '<a href="http://useastdb.ensembl.org/" target="_blank" class="">useastdb.ensembl.org</a>',</div><div class=""> -user => 'anonymous'</div><div class=""> );</div><div class=""><br class=""></div><div class="">my $gene_adaptor = $registry->get_adaptor('homo_sapiens','core','gene');</div><div class="">my $slice_adaptor = $registry->get_adaptor('homo_sapiens','core','slice');</div><div class=""><br class=""></div><div class="">my $slice = $slice_adaptor->fetch_by_region( 'chromosome', "4", 139000000, 139100000);</div><div class=""><br class=""></div><div class="">print "Variation:\n";</div><div class=""><br class=""></div><div class="">my $vf_adaptor = $registry->get_adaptor( 'human', 'variation', 'variationfeature' );</div><div class="">$vf_adaptor->db->use_vcf(1);</div><div class="">my $vars = $vf_adaptor->fetch_all_by_Slice($slice);</div><div class=""><br class=""></div><div class="">foreach my $vf (@{$vars}){</div><div class=""> print "\t".$vf->variation_name(),"\n";</div><div class=""> print "\t".$vf->allele_string(),"\n";</div><div class=""> print "\tChromosome: ".$slice->seq_region_name."\n";</div><div class=""> print "\tStart-End: ".$vf->seq_region_start."-".$vf->seq_region_end."\n";</div><div class=""> print "\tConsequences: ".join(",",@{$vf->consequence_type()}),"\n";</div><div class=""> if (1==1) {</div><div class=""><span style="white-space:pre-wrap" class=""> </span>my $alleles = $vf->variation->get_all_Alleles();</div><div class=""><span style="white-space:pre-wrap" class=""> </span>foreach my $allele (@{$alleles}) {</div><div class=""><span style="white-space:pre-wrap" class=""> </span> next unless (defined $allele->population);</div><div class=""><span style="white-space:pre-wrap" class=""> </span> my $allele_string = $allele->allele;</div><div class=""><span style="white-space:pre-wrap" class=""> </span> my $frequency = $allele->frequency || 'NA';</div><div class=""><span style="white-space:pre-wrap" class=""> </span> my $population_name = $allele->population->name;</div><div class=""><span style="white-space:pre-wrap" class=""> </span> printf("\tAllele %s has frequency: %s in population %s.\n", $allele_string, $frequency, $po</div><div class="">pulation_name);</div><div class=""><span style="white-space:pre-wrap" class=""> </span>}</div><div class=""> }</div><div class=""> print "\n";</div><div class="">}</div></div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><br class=""></div></div><div class=""><div class="h5"><div class=""><blockquote type="cite" class=""><div class="">On Jul 7, 2016, at 12:51 PM, <a href="mailto:andrew126@mac.com" target="_blank" class="">andrew126@mac.com</a> wrote:</div><br class=""><div class=""><div style="word-wrap:break-word" class=""><div class="">Hi Will,</div><div class=""><br class=""></div><div class="">Yes, I can definitely share .. an example of a script that is throwing errors is in the original post at the start of the this thread.</div><div class=""><br class=""></div><div class="">Many thanks,</div><div class=""><br class=""></div><div class="">Andrew</div><br class=""><div class=""><blockquote type="cite" class=""><div class="">On Jul 7, 2016, at 11:57 AM, Will McLaren <<a href="mailto:wm2@ebi.ac.uk" target="_blank" class="">wm2@ebi.ac.uk</a>> wrote:</div><br class=""><div class=""><div dir="ltr" class="">Hi Andrew,<div class=""><br class=""></div><div class="">Strange, are you able to share your test script?</div><div class=""><br class=""></div><div class="">Another solution is to download the VCF files that are being opened over the FTP connection [1] and modifying the config file in ensembl-variation/modules/Bio/EnsEMBL/Variation/DBSQL/vcf_config.json to point to the path where you downloaded the files.</div><div class=""><br class=""></div><div class="">Cheers</div><div class=""><br class=""></div><div class="">Will</div><div class=""><br class=""></div><div class="">[1] : <a href="ftp://ftp.ensembl.org/pub/variation_genotype/homo_sapiens/" target="_blank" class="">ftp://ftp.ensembl.org/pub/variation_genotype/homo_sapiens/</a> or for GRCh37 <a href="ftp://ftp.ensembl.org/pub/grch37/release-82/variation/vcf/homo_sapiens/1000GENOMES-phase_3-genotypes/" target="_blank" class="">ftp://ftp.ensembl.org/pub/grch37/release-82/variation/vcf/homo_sapiens/1000GENOMES-phase_3-genotypes/</a> </div></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On 7 July 2016 at 13:49, <span dir="ltr" class=""><<a href="mailto:andrew126@mac.com" target="_blank" class="">andrew126@mac.com</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word" class=""><div class="">Hi Will,</div><div class=""><br class=""></div><div class="">Thanks for the response.</div><div class=""><br class=""></div><div class="">I've updated to the latest fixes, but I'm still getting these errors using the same code.</div><div class=""><br class=""></div><div class="">Is there anything else I can try?</div><div class=""><br class=""></div><div class="">Thanks,</div><div class=""><br class=""></div><div class="">Andrew</div><div class=""><br class=""></div><div class=""><div class="">andrew@ubuntu1404-64-ak:~/gte/src$ git ensembl --pull api</div><div class="">* Processing 'api'</div><div class=""><br class=""></div><div class="">* Working with module 'ensembl'</div><div class="">* Performing pull</div><div class="">Already up-to-date.</div><div class=""><br class=""></div><div class="">* Working with module 'ensembl-compara'</div><div class="">* Performing pull</div><div class="">Already up-to-date.</div><div class=""><br class=""></div><div class="">* Working with module 'ensembl-funcgen'</div><div class="">* Performing pull</div><div class="">Already up-to-date.</div><div class=""><br class=""></div><div class="">* Working with module 'ensembl-io'</div><div class="">* Performing pull</div><div class="">Already up-to-date.</div><div class=""><br class=""></div><div class="">* Working with module 'ensembl-variation'</div><div class="">* Performing pull</div><div class="">Already up-to-date.</div><div class=""><br class=""></div></div><div class=""><div class="">perl <a href="http://tryit_crash.pl/" target="_blank" class="">tryit_crash.pl</a> > tic.out &</div><div class="">[2] 3517</div><span class=""><div class="">andrew@ubuntu1404-64-ak:~/gte$ UNIVERSAL->import is deprecated and will be removed in a future perl at /home/andrew/gte/src/bioperl-live/Bio/Tree/TreeFunctionsI.pm line 94.</div><div class="">Subroutine Tabix::tabix_open redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">Subroutine Tabix::tabix_close redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">Subroutine Tabix::tabix_query redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">Subroutine Tabix::tabix_read redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">Subroutine Tabix::tabix_getnames redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">Subroutine TabixIterator::tabix_iter_free redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">[kftp_connect_file] 530 You may not have more than 15 concurrent connections at any time.</div><div class="">[kftp_connect_file] 530 You may not have more than 15 concurrent connections at any time.</div><div class="">[main] fail to open the data file.</div></span><div class="">Tabix::tabix_query: t is not of type tabix_tPtr at /home/andrew/gte/src/ensembl-io/modules/Bio/EnsEMBL/IO/TabixParser.pm line 70.</div></div><div class=""><div class=""><div class=""><br class=""></div><div class=""><br class=""></div><br class=""><div class=""><blockquote type="cite" class=""><div class="">On Jul 7, 2016, at 6:35 AM, Will McLaren <<a href="mailto:wm2@ebi.ac.uk" target="_blank" class="">wm2@ebi.ac.uk</a>> wrote:</div><br class=""><div class=""><div dir="ltr" class=""><div class="">Hi Andrew,<br class=""></div><div class=""><br class=""></div><div class="">We added a fix for this in the release/84 code ([1] if you're interested) that limits the number of concurrent VCF connections to 2. If you are on release/84, use git pull in the ensembl-variation directory to get the latest fixes.</div><div class=""><br class=""></div><div class="">If you are using an earlier version of the API, I'd suggest you update to 84.</div><div class=""><br class=""></div><div class="">Regards</div><div class=""><br class=""></div><div class="">Will McLaren</div><div class=""><br class=""></div><div class="">[1] : <a href="https://github.com/Ensembl/ensembl-variation/commit/cd6813a66ca2cead9dc4da4e3a7bfa965b78f2ae" target="_blank" class="">https://github.com/Ensembl/ensembl-variation/commit/cd6813a66ca2cead9dc4da4e3a7bfa965b78f2ae</a><br class=""></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On 6 July 2016 at 20:50, <span dir="ltr" class=""><<a href="mailto:andrew126@mac.com" target="_blank" class="">andrew126@mac.com</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">Hi,<br class="">
<br class="">
I'm using API 84 on 64-bit Ubuntu.<br class="">
<br class="">
uname -a<br class="">
Linux ubuntu1404-64-ak 4.2.0-27-generic #32~14.04.1-Ubuntu SMP Fri Jan 22 15:32:26 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux<br class="">
<br class="">
The below script reliably generates errors because of the number of concurrent connections. If get_all_Alleles() is not called, then no errors are experienced. I think other similar calls also generate these errors, but this is a simple example to get started.<br class="">
<br class="">
Posted below the script is an example of the error messages encountered.<br class="">
<br class="">
Is there a way to accomplish the same goal (summary of all alleles for each variant) without generating such errors?<br class="">
<br class="">
Please let me know if any other information would be useful.<br class="">
<br class="">
Thanks for any help,<br class="">
<br class="">
Andrew<br class="">
<br class="">
<br class="">
use strict;<br class="">
$|=1;<br class="">
use IPC::Run;<br class="">
use Bio::EnsEMBL::Registry;<br class="">
use Bio::EnsEMBL::ApiVersion;<br class="">
printf( "The API version used is %s\n", software_version() );<br class="">
<br class="">
my $registry = 'Bio::EnsEMBL::Registry';<br class="">
$registry->load_all();<br class="">
$registry->set_reconnect_when_lost();<br class="">
$registry->load_registry_from_db(<br class="">
-host => '<a href="http://useastdb.ensembl.org/" rel="noreferrer" target="_blank" class="">useastdb.ensembl.org</a>',<br class="">
-user => 'anonymous'<br class="">
);<br class="">
<br class="">
my $gene_adaptor = $registry->get_adaptor('homo_sapiens','core','gene');<br class="">
my $slice_adaptor = $registry->get_adaptor('homo_sapiens','core','slice');<br class="">
<br class="">
my $slice = $slice_adaptor->fetch_by_region( 'chromosome', "4", 139000000, 139100000);<br class="">
<br class="">
print "Variation:\n";<br class="">
<br class="">
my $vf_adaptor = $registry->get_adaptor( 'human', 'variation', 'variationfeature' );<br class="">
$vf_adaptor->db->use_vcf(1);<br class="">
my $vars = $vf_adaptor->fetch_all_by_Slice($slice);<br class="">
<br class="">
foreach my $vf (@{$vars}){<br class="">
print "\t".$vf->variation_name(),"\n";<br class="">
print "\t".$vf->allele_string(),"\n";<br class="">
print "\tChromosome: ".$slice->seq_region_name."\n";<br class="">
print "\tStart-End: ".$vf->seq_region_start."-".$vf->seq_region_end."\n";<br class="">
print "\tConsequences: ".join(",",@{$vf->consequence_type()}),"\n";<br class="">
if (1==1) {<br class="">
my $alleles = $vf->variation->get_all_Alleles();<br class="">
foreach my $allele (@{$alleles}) {<br class="">
next unless (defined $allele->population);<br class="">
my $allele_string = $allele->allele;<br class="">
my $frequency = $allele->frequency || 'NA';<br class="">
my $population_name = $allele->population->name;<br class="">
printf("\tAllele %s has frequency: %s in population %s.\n", $allele_string, $frequency, $population_name);<br class="">
}<br class="">
}<br class="">
print "\n";<br class="">
}<br class="">
<br class="">
<br class="">
<br class="">
<br class="">
<br class="">
<br class="">
andrew@ubuntu1404-64-ak:~/gte$ perl <a href="http://tryit_crash.pl/" rel="noreferrer" target="_blank" class="">tryit_crash.pl</a> > tic.out &<br class="">
[2] 3059<br class="">
andrew@ubuntu1404-64-ak:~/gte$ UNIVERSAL->import is deprecated and will be removed in a future perl at /home/andrew/gte/src/bioperl-live/Bio/Tree/TreeFunctionsI.pm line 94.<br class="">
Subroutine Tabix::tabix_open redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
Subroutine Tabix::tabix_close redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
Subroutine Tabix::tabix_query redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
Subroutine Tabix::tabix_read redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
Subroutine Tabix::tabix_getnames redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
Subroutine TabixIterator::tabix_iter_free redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
[kftp_connect_file] 530 You may not have more than 15 concurrent connections at any time.<br class="">
[main] fail to open the data file.<br class="">
[kftp_connect_file] 530 You may not have more than 15 concurrent connections at any time.<br class="">
*** buffer overflow detected ***: perl terminated<br class="">
======= Backtrace: =========<br class="">
/lib/x86_64-linux-gnu/libc.so.6(+0x7338f)[0x7f7fcd13138f]<br class="">
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f7fcd1c8c9c]<br class="">
/lib/x86_64-linux-gnu/libc.so.6(+0x109b60)[0x7f7fcd1c7b60]<br class="">
/lib/x86_64-linux-gnu/libc.so.6(+0x10abe7)[0x7f7fcd1c8be7]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(+0xaebd)[0x7f7fc8011ebd]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(+0xb0aa)[0x7f7fc80120aa]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(knet_read+0xb8)[0x7f7fc8012c18]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(bgzf_read_block+0x165)[0x7f7fc8010c25]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(bgzf_getline+0x37)[0x7f7fc8011cc7]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(ti_iter_read+0xd2)[0x7f7fc8010172]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(+0x3368)[0x7f7fc800a368]<br class="">
/usr/lib/libperl.so.5.18(Perl_pp_entersub+0x596)[0x7f7fcd53c866]<br class="">
/usr/lib/libperl.so.5.18(Perl_runops_standard+0x16)[0x7f7fcd534e86]<br class="">
/usr/lib/libperl.so.5.18(perl_run+0x254)[0x7f7fcd4cd714]<br class="">
perl(main+0x149)[0x400dd9]<br class="">
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f7fcd0dfec5]<br class="">
perl[0x400e11]<br class="">
======= Memory map: ========<br class="">
00400000-00402000 r-xp 00000000 fc:00 133596 /usr/bin/perl<br class="">
00601000-00602000 r--p 00001000 fc:00 133596 /usr/bin/perl<br class="">
00602000-00603000 rw-p 00002000 fc:00 133596 /usr/bin/perl<br class="">
01805000-061dc000 rw-p 00000000 00:00 0 [heap]<br class="">
7f7fc4000000-7f7fc4021000 rw-p 00000000 00:00 0<br class="">
7f7fc4021000-7f7fc8000000 ---p 00000000 00:00 0<br class="">
7f7fc8007000-7f7fc8015000 r-xp 00000000 fc:00 532847 /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so<br class="">
7f7fc8015000-7f7fc8214000 ---p 0000e000 fc:00 532847 /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so<br class="">
7f7fc8214000-7f7fc8215000 r--p 0000d000 fc:00 532847 /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so<br class="">
7f7fc8215000-7f7fc8216000 rw-p 0000e000 fc:00 532847 /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so<br class="">
7f7fc8216000-7f7fc822b000 r-xp 00000000 fc:00 260284 /usr/lib/perl/5.18.2/auto/Storable/Storable.so<br class="">
7f7fc822b000-7f7fc842a000 ---p 00015000 fc:00 260284 /usr/lib/perl/5.18.2/auto/Storable/Storable.so<br class="">
7f7fc842a000-7f7fc842b000 r--p 00014000 fc:00 260284 /usr/lib/perl/5.18.2/auto/Storable/Storable.so<br class="">
7f7fc842b000-7f7fc842c000 rw-p 00015000 fc:00 260284 /usr/lib/perl/5.18.2/auto/Storable/Storable.so<br class="">
7f7fc842c000-7f7fc842e000 r-xp 00000000 fc:00 260313 /usr/lib/perl/5.18.2/auto/attributes/attributes.so<br class="">
7f7fc842e000-7f7fc862d000 ---p 00002000 fc:00 260313 /usr/lib/perl/5.18.2/auto/attributes/attributes.so<br class="">
7f7fc862d000-7f7fc862e000 r--p 00001000 fc:00 260313 /usr/lib/perl/5.18.2/auto/attributes/attributes.so<br class="">
7f7fc862e000-7f7fc862f000 rw-p 00002000 fc:00 260313 /usr/lib/perl/5.18.2/auto/attributes/attributes.so<br class="">
7f7fc862f000-7f7fc863d000 r-xp 00000000 fc:00 311765 /usr/lib/perl5/auto/JSON/XS/XS.so<br class="">
7f7fc863d000-7f7fc883c000 ---p 0000e000 fc:00 311765 /usr/lib/perl5/auto/JSON/XS/XS.so<br class="">
7f7fc883c000-7f7fc883d000 r--p 0000d000 fc:00 311765 /usr/lib/perl5/auto/JSON/XS/XS.so<br class="">
7f7fc883d000-7f7fc883e000 rw-p 0000e000 fc:00 311765 /usr/lib/perl5/auto/JSON/XS/XS.so<br class="">
7f7fc883e000-7f7fc884c000 r-xp 00000000 fc:00 260173 /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so<br class="">
7f7fc884c000-7f7fc8a4b000 ---p 0000e000 fc:00 260173 /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so<br class="">
7f7fc8a4b000-7f7fc8a4c000 r--p 0000d000 fc:00 260173 /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so<br class="">
7f7fc8a4c000-7f7fc8a4d000 rw-p 0000e000 fc:00 260173 /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so<br class="">
7f7fc8a4d000-7f7fc8a53000 r-xp 00000000 fc:00 260228 /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so<br class="">
7f7fc8a53000-7f7fc8c52000 ---p 00006000 fc:00 260228 /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so<br class="">
7f7fc8c52000-7f7fc8c53000 r--p 00005000 fc:00 260228 /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so<br class="">
7f7fc8c53000-7f7fc8c54000 rw-p 00006000 fc:00 260228 /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so<br class="">
7f7fc8c54000-7f7fc8c5c000 r-xp 00000000 fc:00 260282 /usr/lib/perl/5.18.2/auto/Socket/Socket.so<br class="">
7f7fc8c5c000-7f7fc8e5c000 ---p 00008000 fc:00 260282 /usr/lib/perl/5.18.2/auto/Socket/Socket.so<br class="">
7f7fc8e5c000-7f7fc8e5e000 r--p 00008000 fc:00 260282 /usr/lib/perl/5.18.2/auto/Socket/Socket.so<br class="">
7f7fc8e5e000-7f7fc8e5f000 rw-p 0000a000 fc:00 260282 /usr/lib/perl/5.18.2/auto/Socket/Socket.so<br class="">
7f7fc8e5f000-7f7fc8e63000 r-xp 00000000 fc:00 260192 /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so<br class="">
7f7fc8e63000-7f7fc9062000 ---p 00004000 fc:00 260192 /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so<br class="">
7f7fc9062000-7f7fc9063000 r--p 00003000 fc:00 260192 /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so<br class="">
7f7fc9063000-7f7fc9064000 rw-p 00004000 fc:00 260192 /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so<br class="">
7f7fc9064000-7f7fc9066000 r-xp 00000000 fc:00 260176 /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so<br class="">
7f7fc9066000-7f7fc9265000 ---p 00002000 fc:00 260176 /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so<br class="">
7f7fc9265000-7f7fc9266000 r--p 00001000 fc:00 260176 /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so<br class="">
7f7fc9266000-7f7fc9267000 rw-p 00002000 fc:00 260176 /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so<br class="">
7f7fc9267000-7f7fc927e000 r-xp 00000000 fc:00 395859 /lib/x86_64-linux-gnu/<a href="http://libresolv-2.19.so/" rel="noreferrer" target="_blank" class="">libresolv-2.19.so</a><br class="">
7f7fc927e000-7f7fc947e000 ---p 00017000 fc:00 395859 /lib/x86_64-linux-gnu/<a href="http://libresolv-2.19.so/" rel="noreferrer" target="_blank" class="">libresolv-2.19.so</a><br class="">
7f7fc947e000-7f7fc947f000 r--p 00017000 fc:00 395859 /lib/x86_64-linux-gnu/<a href="http://libresolv-2.19.so/" rel="noreferrer" target="_blank" class="">libresolv-2.19.so</a><br class="">
7f7fc947f000-7f7fc9480000 rw-p 00018000 fc:00 395859 /lib/x86_64-linux-gnu/<a href="http://libresolv-2.19.so/" rel="noreferrer" target="_blank" class="">libresolv-2.19.so</a><br class="">
7f7fc9480000-7f7fc9482000 rw-p 00000000 00:00 0<br class="">
7f7fc9482000-7f7fc9487000 r-xp 00000000 fc:00 395806 /lib/x86_64-linux-gnu/<a href="http://libnss_dns-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_dns-2.19.so</a><br class="">
7f7fc9487000-7f7fc9686000 ---p 00005000 fc:00 395806 /lib/x86_64-linux-gnu/<a href="http://libnss_dns-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_dns-2.19.so</a><br class="">
7f7fc9686000-7f7fc9687000 r--p 00004000 fc:00 395806 /lib/x86_64-linux-gnu/<a href="http://libnss_dns-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_dns-2.19.so</a><br class="">
7f7fc9687000-7f7fc9688000 rw-p 00005000 fc:00 395806 /lib/x86_64-linux-gnu/<a href="http://libnss_dns-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_dns-2.19.so</a><br class="">
7f7fc9688000-7f7fc968a000 r-xp 00000000 fc:00 395814 /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2<br class="">
7f7fc968a000-7f7fc9889000 ---p 00002000 fc:00 395814 /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2<br class="">
7f7fc9889000-7f7fc988a000 r--p 00001000 fc:00 395814 /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2<br class="">
7f7fc988a000-7f7fc988b000 rw-p 00002000 fc:00 395814 /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2<br class="">
7f7fc988b000-7f7fc9896000 r-xp 00000000 fc:00 395808 /lib/x86_64-linux-gnu/<a href="http://libnss_files-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_files-2.19.so</a><br class="">
7f7fc9896000-7f7fc9a95000 ---p 0000b000 fc:00 395808 /lib/x86_64-linux-gnu/<a href="http://libnss_files-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_files-2.19.so</a><br class="">
7f7fc9a95000-7f7fc9a96000 r--p 0000a000 fc:00 395808 /lib/x86_64-linux-gnu/<a href="http://libnss_files-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_files-2.19.so</a><br class="">
7f7fc9a96000-7f7fc9a97000 rw-p 0000b000 fc:00 395808 /lib/x86_64-linux-gnu/<a href="http://libnss_files-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_files-2.19.so</a><br class="">
7f7fc9a97000-7f7fc9aad000 r-xp 00000000 fc:00 395760 /lib/x86_64-linux-gnu/libgcc_s.so.1<br class="">
7f7fc9aad000-7f7fc9cac000 ---p 00016000 fc:00 395760 /lib/x86_64-linux-gnu/libgcc_s.so.1<br class="">
7f7fc9cac000-7f7fc9cad000 rw-p 00015000 fc:00 395760 /lib/x86_64-linux-gnu/libgcc_s.so.1<br class="">
7f7fc9cad000-7f7fc9cae000 ---p 00000000 00:00 0<br class="">
7f7fc9cae000-7f7fca4ae000 rw-p 00000000 00:00 0<br class="">
7f7fca4ae000-7f7fca4c6000 r-xp 00000000 fc:00 395896 /lib/x86_64-linux-gnu/libz.so.1.2.8<br class="">
7f7fca4c6000-7f7fca6c5000 ---p 00018000 fc:00 395896 /lib/x86_64-linux-gnu/libz.so.1.2.8<br class="">
7f7fca6c5000-7f7fca6c6000 r--p 00017000 fc:00 395896 /lib/x86_64-linux-gnu/libz.so.1.2.8<br class="">
7f7fca6c6000-7f7fca6c7000 rw-p 00018000 fc:00 395896 /lib/x86_64-linux-gnu/libz.so.1.2.8<br class="">
7f7fca6c7000-7f7fca977000 r-xp 00000000 fc:00 183788 /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0<br class="">
7f7fca977000-7f7fcab77000 ---p 002b0000 fc:00 183788 /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0<br class="">
7f7fcab77000-7f7fcab7c000 r--p 002b0000 fc:00 183788 /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0<br class="">
7f7fcab7c000-7f7fcabfa000 rw-p 002b5000 fc:00 183788 /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0<br class="">
7f7fcabfa000-7f7fcabff000 rw-p 00000000 00:00 0<br class="">
7f7fcabff000-7f7fcac19000 r-xp 00000000 fc:00 183957 /usr/lib/perl5/auto/DBD/mysql/mysql.so<br class="">
7f7fcac19000-7f7fcae19000 ---p 0001a000 fc:00 183957 /usr/lib/perl5/auto/DBD/mysql/mysql.so<br class="">
7f7fcae19000-7f7fcae1b000 r--p 0001a000 fc:00 183957 /usr/lib/perl5/auto/DBD/mysql/mysql.so<br class="">
7f7fcae1b000-7f7fcae1c000 rw-p 0001c000 fc:00 183957 /usr/lib/perl5/auto/DBD/mysql/mysql.so<br class="">
7f7fcae1c000-7f7fcae24000 r-xp 00000000 fc:00 260182 /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so<br class="">
7f7fcae24000-7f7fcb023000 ---p 00008000 fc:00 260182 /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so<br class="">
7f7fcb023000-7f7fcb024000 r--p 00007000 fc:00 260182 /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so<br class="">
7f7fcb024000-7f7fcb025000 rw-p 00008000 fc:00 260182 /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so<br class="">
7f7fcb025000-7f7fcb02c000 r-xp 00000000 fc:00 395861 /lib/x86_64-linux-gnu/<a href="http://librt-2.19.so/" rel="noreferrer" target="_blank" class="">librt-2.19.so</a><br class="">
7f7fcb02c000-7f7fcb22b000 ---p 00007000 fc:00 395861 /lib/x86_64-linux-gnu/<a href="http://librt-2.19.so/" rel="noreferrer" target="_blank" class="">librt-2.19.so</a><br class="">
7f7fcb22b000-7f7fcb22c000 r--p 00006000 fc:00 395861 /lib/x86_64-linux-gnu/<a href="http://librt-2.19.so/" rel="noreferrer" target="_blank" class="">librt-2.19.so</a><br class="">
7f7fcb22c000-7f7fcb22d000 rw-p 00007000 fc:00 395861 /lib/x86_64-linux-gnu/<a href="http://librt-2.19.so/" rel="noreferrer" target="_blank" class="">librt-2.19.so</a><br class="">
7f7fcb22d000-7f7fcb232000 r-xp 00000000 fc:00 260301 /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so<br class="">
7f7fcb232000-7f7fcb431000 ---p 00005000 fc:00 260301 /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so<br class="">
7f7fcb431000-7f7fcb432000 r--p 00004000 fc:00 260301 /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so<br class="">
7f7fcb432000-7f7fcb433000 rw-p 00005000 fc:00 260301 /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so<br class="">
7f7fcb433000-7f7fcb435000 r-xp 00000000 fc:00 260297 /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so<br class="">
7f7fcb435000-7f7fcb634000 ---p 00002000 fc:00 260297 /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so<br class="">
7f7fcb634000-7f7fcb635000 r--p 00001000 fc:00 260297 /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so<br class="">
7f7fcb635000-7f7fcb636000 rw-p 00002000 fc:00 260297 /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so<br class="">
7f7fcb636000-7f7fcb63b000 r-xp 00000000 fc:00 260251 /usr/lib/perl/5.18.2/auto/List/Util/Util.so<br class="">
7f7fcb63b000-7f7fcb83b000 ---p 00005000 fc:00 260251 /usr/lib/perl/5.18.2/auto/List/Util/Util.so<br class="">
7f7fcb83b000-7f7fcb83c000 r--p 00005000 fc:00 260251 /usr/lib/perl/5.18.2/auto/List/Util/Util.so<br class="">
7f7fcb83c000-7f7fcb83d000 rw-p 00006000 fc:00 260251 /usr/lib/perl/5.18.2/auto/List/Util/Util.so<br class="">
7f7fcb83d000-7f7fcb85b000 r-xp 00000000 fc:00 183894 /usr/lib/perl5/auto/DBI/DBI.so<br class="">
7f7fcb85b000-7f7fcba5a000 ---p 0001e000 fc:00 183894 /usr/lib/perl5/auto/DBI/DBI.so<br class="">
7f7fcba5a000-7f7fcba5b000 r--p 0001d000 fc:00 183894 /usr/lib/perl5/auto/DBI/DBI.so<br class="">
7f7fcba5b000-7f7fcba5c000 rw-p 0001e000 fc:00 183894 /usr/lib/perl5/auto/DBI/DBI.so<br class="">
7f7fcba5c000-7f7fcba60000 r-xp 00000000 fc:00 260245 /usr/lib/perl/5.18.2/auto/IO/IO.so<br class="">
7f7fcba60000-7f7fcbc5f000 ---p 00004000 fc:00 260245 /usr/lib/perl/5.18.2/auto/IO/IO.so<br class="">
7f7fcbc5f000-7f7fcbc60000 r--p 00003000 fc:00 260245 /usr/lib/perl/5.18.2/auto/IO/IO.so<br class="">
7f7fcbc60000-7f7fcbc61000 rw-p 00004000 fc:00 260245 /usr/lib/perl/5.18.2/auto/IO/IO.so<br class="">
7f7fcbc61000-7f7fcbc73000 r-xp 00000000 fc:00 260266 /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so<br class="">
7f7fcbc73000-7f7fcbe72000 ---p 00012000 fc:00 260266 /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so<br class="">
7f7fcbe72000-7f7fcbe75000 r--p 00011000 fc:00 260266 /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so<br class="">
7f7fcbe75000-7f7fcbe76000 rw-p 00014000 fc:00 260266 /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so<br class="">
7f7fcbe76000-7f7fcbe79000 r-xp 00000000 fc:00 260222 /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so<br class="">
7f7fcbe79000-7f7fcc079000 ---p 00003000 fc:00 260222 /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so<br class="">
7f7fcc079000-7f7fcc07a000 r--p 00003000 fc:00 260222 /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so<br class="">
7f7fcc07a000-7f7fcc07b000 rw-p 00004000 fc:00 260222 /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so<br class="">
7f7fcc07b000-7f7fcc75d000 r--p 00000000 fc:00 140924 /usr/lib/locale/locale-archive<br class="">
7f7fcc75d000-7f7fcc766000 r-xp 00000000 fc:00 395743 /lib/x86_64-linux-gnu/<a href="http://libcrypt-2.19.so/" rel="noreferrer" target="_blank" class="">libcrypt-2.19.so</a><br class="">
7f7fcc766000-7f7fcc966000 ---p 00009000 fc:00 395743 /lib/x86_64-linux-gnu/<a href="http://libcrypt-2.19.so/" rel="noreferrer" target="_blank" class="">libcrypt-2.19.so</a><br class="">
7f7fcc966000-7f7fcc967000 r--p 00009000 fc:00 395743 /lib/x86_64-linux-gnu/<a href="http://libcrypt-2.19.so/" rel="noreferrer" target="_blank" class="">libcrypt-2.19.so</a><br class="">
7f7fcc967000-7f7fcc968000 rw-p 0000a000 fc:00 395743 /lib/x86_64-linux-gnu/<a href="http://libcrypt-2.19.so/" rel="noreferrer" target="_blank" class="">libcrypt-2.19.so</a><br class="">
[2]+ Aborted (core dumped) perl <a href="http://tryit_crash.pl/" rel="noreferrer" target="_blank" class="">tryit_crash.pl</a> > tic.out<br class="">
<br class="">
<br class="">
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Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank" class="">Dev@ensembl.org</a><br class="">
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</blockquote></div><br class=""></div></div>
_______________________________________________<br class="">Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank" class="">Dev@ensembl.org</a><br class="">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank" class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="">Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank" class="">http://www.ensembl.info/</a><br class=""></div></blockquote></div><br class=""></div></div></div><br class="">_______________________________________________<br class="">
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Ensembl Blog: <a href="http://www.ensembl.info/" rel="noreferrer" target="_blank" class="">http://www.ensembl.info/</a><br class="">
<br class=""></blockquote></div><br class=""></div>
_______________________________________________<br class="">Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank" class="">Dev@ensembl.org</a><br class="">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank" class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="">Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank" class="">http://www.ensembl.info/</a><br class=""></div></blockquote></div><br class=""></div>_______________________________________________<br class="">Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank" class="">Dev@ensembl.org</a><br class="">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank" class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="">Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank" class="">http://www.ensembl.info/</a><br class=""></div></blockquote></div><br class=""></div></div></div><br class="">_______________________________________________<br class="">
Dev mailing list <a href="mailto:Dev@ensembl.org" class="">Dev@ensembl.org</a><br class="">
Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" rel="noreferrer" target="_blank" class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="">
Ensembl Blog: <a href="http://www.ensembl.info/" rel="noreferrer" target="_blank" class="">http://www.ensembl.info/</a><br class="">
<br class=""></blockquote></div><br class=""></div></div>
_______________________________________________<br class="">Dev mailing list <a href="mailto:Dev@ensembl.org" class="">Dev@ensembl.org</a><br class="">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="">Ensembl Blog: <a href="http://www.ensembl.info/" class="">http://www.ensembl.info/</a><br class=""></div></blockquote></div><br class=""></body></html>