<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class="">Hi,</div><div class=""><br class=""></div><div class="">In case it helps to debug this issue, I've reattached the perl script that throws "too many connection" errors .. even with the release/84 code fix.</div><div class=""><br class=""></div><div class="">Many thanks,</div><div class=""><br class=""></div><div class="">Andrew</div><div class=""><br class=""></div><div class=""><div class="">use strict;</div><div class="">$|=1;</div><div class="">use IPC::Run;</div><div class="">use Bio::EnsEMBL::Registry;</div><div class="">use Bio::EnsEMBL::ApiVersion; </div><div class="">printf( "The API version used is %s\n", software_version() ); </div><div class=""><br class=""></div><div class="">my $registry = 'Bio::EnsEMBL::Registry';</div><div class="">$registry->load_all();</div><div class="">$registry->set_reconnect_when_lost();</div><div class="">$registry->load_registry_from_db(</div><div class=""> -host => '<a href="http://useastdb.ensembl.org" class="">useastdb.ensembl.org</a>',</div><div class=""> -user => 'anonymous'</div><div class=""> );</div><div class=""><br class=""></div><div class="">my $gene_adaptor = $registry->get_adaptor('homo_sapiens','core','gene');</div><div class="">my $slice_adaptor = $registry->get_adaptor('homo_sapiens','core','slice');</div><div class=""><br class=""></div><div class="">my $slice = $slice_adaptor->fetch_by_region( 'chromosome', "4", 139000000, 139100000);</div><div class=""><br class=""></div><div class="">print "Variation:\n";</div><div class=""><br class=""></div><div class="">my $vf_adaptor = $registry->get_adaptor( 'human', 'variation', 'variationfeature' );</div><div class="">$vf_adaptor->db->use_vcf(1);</div><div class="">my $vars = $vf_adaptor->fetch_all_by_Slice($slice);</div><div class=""><br class=""></div><div class="">foreach my $vf (@{$vars}){</div><div class=""> print "\t".$vf->variation_name(),"\n";</div><div class=""> print "\t".$vf->allele_string(),"\n";</div><div class=""> print "\tChromosome: ".$slice->seq_region_name."\n";</div><div class=""> print "\tStart-End: ".$vf->seq_region_start."-".$vf->seq_region_end."\n";</div><div class=""> print "\tConsequences: ".join(",",@{$vf->consequence_type()}),"\n";</div><div class=""> if (1==1) {</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>my $alleles = $vf->variation->get_all_Alleles();</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>foreach my $allele (@{$alleles}) {</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span> next unless (defined $allele->population);</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span> my $allele_string = $allele->allele;</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span> my $frequency = $allele->frequency || 'NA';</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span> my $population_name = $allele->population->name;</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span> printf("\tAllele %s has frequency: %s in population %s.\n", $allele_string, $frequency, $po</div><div class="">pulation_name);</div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>}</div><div class=""> }</div><div class=""> print "\n";</div><div class="">}</div></div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><br class=""><div><blockquote type="cite" class=""><div class="">On Jul 7, 2016, at 12:51 PM, <a href="mailto:andrew126@mac.com" class="">andrew126@mac.com</a> wrote:</div><br class="Apple-interchange-newline"><div class=""><meta http-equiv="Content-Type" content="text/html charset=us-ascii" class=""><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class="">Hi Will,</div><div class=""><br class=""></div><div class="">Yes, I can definitely share .. an example of a script that is throwing errors is in the original post at the start of the this thread.</div><div class=""><br class=""></div><div class="">Many thanks,</div><div class=""><br class=""></div><div class="">Andrew</div><br class=""><div class=""><blockquote type="cite" class=""><div class="">On Jul 7, 2016, at 11:57 AM, Will McLaren <<a href="mailto:wm2@ebi.ac.uk" class="">wm2@ebi.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Hi Andrew,<div class=""><br class=""></div><div class="">Strange, are you able to share your test script?</div><div class=""><br class=""></div><div class="">Another solution is to download the VCF files that are being opened over the FTP connection [1] and modifying the config file in ensembl-variation/modules/Bio/EnsEMBL/Variation/DBSQL/vcf_config.json to point to the path where you downloaded the files.</div><div class=""><br class=""></div><div class="">Cheers</div><div class=""><br class=""></div><div class="">Will</div><div class=""><br class=""></div><div class="">[1] : <a href="ftp://ftp.ensembl.org/pub/variation_genotype/homo_sapiens/" class="">ftp://ftp.ensembl.org/pub/variation_genotype/homo_sapiens/</a> or for GRCh37 <a href="ftp://ftp.ensembl.org/pub/grch37/release-82/variation/vcf/homo_sapiens/1000GENOMES-phase_3-genotypes/" class="">ftp://ftp.ensembl.org/pub/grch37/release-82/variation/vcf/homo_sapiens/1000GENOMES-phase_3-genotypes/</a> </div></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On 7 July 2016 at 13:49, <span dir="ltr" class=""><<a href="mailto:andrew126@mac.com" target="_blank" class="">andrew126@mac.com</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word" class=""><div class="">Hi Will,</div><div class=""><br class=""></div><div class="">Thanks for the response.</div><div class=""><br class=""></div><div class="">I've updated to the latest fixes, but I'm still getting these errors using the same code.</div><div class=""><br class=""></div><div class="">Is there anything else I can try?</div><div class=""><br class=""></div><div class="">Thanks,</div><div class=""><br class=""></div><div class="">Andrew</div><div class=""><br class=""></div><div class=""><div class="">andrew@ubuntu1404-64-ak:~/gte/src$ git ensembl --pull api</div><div class="">* Processing 'api'</div><div class=""><br class=""></div><div class="">* Working with module 'ensembl'</div><div class="">* Performing pull</div><div class="">Already up-to-date.</div><div class=""><br class=""></div><div class="">* Working with module 'ensembl-compara'</div><div class="">* Performing pull</div><div class="">Already up-to-date.</div><div class=""><br class=""></div><div class="">* Working with module 'ensembl-funcgen'</div><div class="">* Performing pull</div><div class="">Already up-to-date.</div><div class=""><br class=""></div><div class="">* Working with module 'ensembl-io'</div><div class="">* Performing pull</div><div class="">Already up-to-date.</div><div class=""><br class=""></div><div class="">* Working with module 'ensembl-variation'</div><div class="">* Performing pull</div><div class="">Already up-to-date.</div><div class=""><br class=""></div></div><div class=""><div class="">perl <a href="http://tryit_crash.pl/" target="_blank" class="">tryit_crash.pl</a> > tic.out &</div><div class="">[2] 3517</div><span class=""><div class="">andrew@ubuntu1404-64-ak:~/gte$ UNIVERSAL->import is deprecated and will be removed in a future perl at /home/andrew/gte/src/bioperl-live/Bio/Tree/TreeFunctionsI.pm line 94.</div><div class="">Subroutine Tabix::tabix_open redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">Subroutine Tabix::tabix_close redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">Subroutine Tabix::tabix_query redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">Subroutine Tabix::tabix_read redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">Subroutine Tabix::tabix_getnames redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">Subroutine TabixIterator::tabix_iter_free redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.</div><div class="">[kftp_connect_file] 530 You may not have more than 15 concurrent connections at any time.</div><div class="">[kftp_connect_file] 530 You may not have more than 15 concurrent connections at any time.</div><div class="">[main] fail to open the data file.</div></span><div class="">Tabix::tabix_query: t is not of type tabix_tPtr at /home/andrew/gte/src/ensembl-io/modules/Bio/EnsEMBL/IO/TabixParser.pm line 70.</div></div><div class=""><div class="h5"><div class=""><br class=""></div><div class=""><br class=""></div><br class=""><div class=""><blockquote type="cite" class=""><div class="">On Jul 7, 2016, at 6:35 AM, Will McLaren <<a href="mailto:wm2@ebi.ac.uk" target="_blank" class="">wm2@ebi.ac.uk</a>> wrote:</div><br class=""><div class=""><div dir="ltr" class=""><div class="">Hi Andrew,<br class=""></div><div class=""><br class=""></div><div class="">We added a fix for this in the release/84 code ([1] if you're interested) that limits the number of concurrent VCF connections to 2. If you are on release/84, use git pull in the ensembl-variation directory to get the latest fixes.</div><div class=""><br class=""></div><div class="">If you are using an earlier version of the API, I'd suggest you update to 84.</div><div class=""><br class=""></div><div class="">Regards</div><div class=""><br class=""></div><div class="">Will McLaren</div><div class=""><br class=""></div><div class="">[1] : <a href="https://github.com/Ensembl/ensembl-variation/commit/cd6813a66ca2cead9dc4da4e3a7bfa965b78f2ae" target="_blank" class="">https://github.com/Ensembl/ensembl-variation/commit/cd6813a66ca2cead9dc4da4e3a7bfa965b78f2ae</a><br class=""></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On 6 July 2016 at 20:50, <span dir="ltr" class=""><<a href="mailto:andrew126@mac.com" target="_blank" class="">andrew126@mac.com</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">Hi,<br class="">
<br class="">
I'm using API 84 on 64-bit Ubuntu.<br class="">
<br class="">
uname -a<br class="">
Linux ubuntu1404-64-ak 4.2.0-27-generic #32~14.04.1-Ubuntu SMP Fri Jan 22 15:32:26 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux<br class="">
<br class="">
The below script reliably generates errors because of the number of concurrent connections. If get_all_Alleles() is not called, then no errors are experienced. I think other similar calls also generate these errors, but this is a simple example to get started.<br class="">
<br class="">
Posted below the script is an example of the error messages encountered.<br class="">
<br class="">
Is there a way to accomplish the same goal (summary of all alleles for each variant) without generating such errors?<br class="">
<br class="">
Please let me know if any other information would be useful.<br class="">
<br class="">
Thanks for any help,<br class="">
<br class="">
Andrew<br class="">
<br class="">
<br class="">
use strict;<br class="">
$|=1;<br class="">
use IPC::Run;<br class="">
use Bio::EnsEMBL::Registry;<br class="">
use Bio::EnsEMBL::ApiVersion;<br class="">
printf( "The API version used is %s\n", software_version() );<br class="">
<br class="">
my $registry = 'Bio::EnsEMBL::Registry';<br class="">
$registry->load_all();<br class="">
$registry->set_reconnect_when_lost();<br class="">
$registry->load_registry_from_db(<br class="">
-host => '<a href="http://useastdb.ensembl.org/" rel="noreferrer" target="_blank" class="">useastdb.ensembl.org</a>',<br class="">
-user => 'anonymous'<br class="">
);<br class="">
<br class="">
my $gene_adaptor = $registry->get_adaptor('homo_sapiens','core','gene');<br class="">
my $slice_adaptor = $registry->get_adaptor('homo_sapiens','core','slice');<br class="">
<br class="">
my $slice = $slice_adaptor->fetch_by_region( 'chromosome', "4", 139000000, 139100000);<br class="">
<br class="">
print "Variation:\n";<br class="">
<br class="">
my $vf_adaptor = $registry->get_adaptor( 'human', 'variation', 'variationfeature' );<br class="">
$vf_adaptor->db->use_vcf(1);<br class="">
my $vars = $vf_adaptor->fetch_all_by_Slice($slice);<br class="">
<br class="">
foreach my $vf (@{$vars}){<br class="">
print "\t".$vf->variation_name(),"\n";<br class="">
print "\t".$vf->allele_string(),"\n";<br class="">
print "\tChromosome: ".$slice->seq_region_name."\n";<br class="">
print "\tStart-End: ".$vf->seq_region_start."-".$vf->seq_region_end."\n";<br class="">
print "\tConsequences: ".join(",",@{$vf->consequence_type()}),"\n";<br class="">
if (1==1) {<br class="">
my $alleles = $vf->variation->get_all_Alleles();<br class="">
foreach my $allele (@{$alleles}) {<br class="">
next unless (defined $allele->population);<br class="">
my $allele_string = $allele->allele;<br class="">
my $frequency = $allele->frequency || 'NA';<br class="">
my $population_name = $allele->population->name;<br class="">
printf("\tAllele %s has frequency: %s in population %s.\n", $allele_string, $frequency, $population_name);<br class="">
}<br class="">
}<br class="">
print "\n";<br class="">
}<br class="">
<br class="">
<br class="">
<br class="">
<br class="">
<br class="">
<br class="">
andrew@ubuntu1404-64-ak:~/gte$ perl <a href="http://tryit_crash.pl/" rel="noreferrer" target="_blank" class="">tryit_crash.pl</a> > tic.out &<br class="">
[2] 3059<br class="">
andrew@ubuntu1404-64-ak:~/gte$ UNIVERSAL->import is deprecated and will be removed in a future perl at /home/andrew/gte/src/bioperl-live/Bio/Tree/TreeFunctionsI.pm line 94.<br class="">
Subroutine Tabix::tabix_open redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
Subroutine Tabix::tabix_close redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
Subroutine Tabix::tabix_query redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
Subroutine Tabix::tabix_read redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
Subroutine Tabix::tabix_getnames redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
Subroutine TabixIterator::tabix_iter_free redefined at /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.<br class="">
[kftp_connect_file] 530 You may not have more than 15 concurrent connections at any time.<br class="">
[main] fail to open the data file.<br class="">
[kftp_connect_file] 530 You may not have more than 15 concurrent connections at any time.<br class="">
*** buffer overflow detected ***: perl terminated<br class="">
======= Backtrace: =========<br class="">
/lib/x86_64-linux-gnu/libc.so.6(+0x7338f)[0x7f7fcd13138f]<br class="">
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f7fcd1c8c9c]<br class="">
/lib/x86_64-linux-gnu/libc.so.6(+0x109b60)[0x7f7fcd1c7b60]<br class="">
/lib/x86_64-linux-gnu/libc.so.6(+0x10abe7)[0x7f7fcd1c8be7]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(+0xaebd)[0x7f7fc8011ebd]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(+0xb0aa)[0x7f7fc80120aa]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(knet_read+0xb8)[0x7f7fc8012c18]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(bgzf_read_block+0x165)[0x7f7fc8010c25]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(bgzf_getline+0x37)[0x7f7fc8011cc7]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(ti_iter_read+0xd2)[0x7f7fc8010172]<br class="">
/home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(+0x3368)[0x7f7fc800a368]<br class="">
/usr/lib/libperl.so.5.18(Perl_pp_entersub+0x596)[0x7f7fcd53c866]<br class="">
/usr/lib/libperl.so.5.18(Perl_runops_standard+0x16)[0x7f7fcd534e86]<br class="">
/usr/lib/libperl.so.5.18(perl_run+0x254)[0x7f7fcd4cd714]<br class="">
perl(main+0x149)[0x400dd9]<br class="">
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f7fcd0dfec5]<br class="">
perl[0x400e11]<br class="">
======= Memory map: ========<br class="">
00400000-00402000 r-xp 00000000 fc:00 133596 /usr/bin/perl<br class="">
00601000-00602000 r--p 00001000 fc:00 133596 /usr/bin/perl<br class="">
00602000-00603000 rw-p 00002000 fc:00 133596 /usr/bin/perl<br class="">
01805000-061dc000 rw-p 00000000 00:00 0 [heap]<br class="">
7f7fc4000000-7f7fc4021000 rw-p 00000000 00:00 0<br class="">
7f7fc4021000-7f7fc8000000 ---p 00000000 00:00 0<br class="">
7f7fc8007000-7f7fc8015000 r-xp 00000000 fc:00 532847 /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so<br class="">
7f7fc8015000-7f7fc8214000 ---p 0000e000 fc:00 532847 /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so<br class="">
7f7fc8214000-7f7fc8215000 r--p 0000d000 fc:00 532847 /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so<br class="">
7f7fc8215000-7f7fc8216000 rw-p 0000e000 fc:00 532847 /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so<br class="">
7f7fc8216000-7f7fc822b000 r-xp 00000000 fc:00 260284 /usr/lib/perl/5.18.2/auto/Storable/Storable.so<br class="">
7f7fc822b000-7f7fc842a000 ---p 00015000 fc:00 260284 /usr/lib/perl/5.18.2/auto/Storable/Storable.so<br class="">
7f7fc842a000-7f7fc842b000 r--p 00014000 fc:00 260284 /usr/lib/perl/5.18.2/auto/Storable/Storable.so<br class="">
7f7fc842b000-7f7fc842c000 rw-p 00015000 fc:00 260284 /usr/lib/perl/5.18.2/auto/Storable/Storable.so<br class="">
7f7fc842c000-7f7fc842e000 r-xp 00000000 fc:00 260313 /usr/lib/perl/5.18.2/auto/attributes/attributes.so<br class="">
7f7fc842e000-7f7fc862d000 ---p 00002000 fc:00 260313 /usr/lib/perl/5.18.2/auto/attributes/attributes.so<br class="">
7f7fc862d000-7f7fc862e000 r--p 00001000 fc:00 260313 /usr/lib/perl/5.18.2/auto/attributes/attributes.so<br class="">
7f7fc862e000-7f7fc862f000 rw-p 00002000 fc:00 260313 /usr/lib/perl/5.18.2/auto/attributes/attributes.so<br class="">
7f7fc862f000-7f7fc863d000 r-xp 00000000 fc:00 311765 /usr/lib/perl5/auto/JSON/XS/XS.so<br class="">
7f7fc863d000-7f7fc883c000 ---p 0000e000 fc:00 311765 /usr/lib/perl5/auto/JSON/XS/XS.so<br class="">
7f7fc883c000-7f7fc883d000 r--p 0000d000 fc:00 311765 /usr/lib/perl5/auto/JSON/XS/XS.so<br class="">
7f7fc883d000-7f7fc883e000 rw-p 0000e000 fc:00 311765 /usr/lib/perl5/auto/JSON/XS/XS.so<br class="">
7f7fc883e000-7f7fc884c000 r-xp 00000000 fc:00 260173 /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so<br class="">
7f7fc884c000-7f7fc8a4b000 ---p 0000e000 fc:00 260173 /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so<br class="">
7f7fc8a4b000-7f7fc8a4c000 r--p 0000d000 fc:00 260173 /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so<br class="">
7f7fc8a4c000-7f7fc8a4d000 rw-p 0000e000 fc:00 260173 /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so<br class="">
7f7fc8a4d000-7f7fc8a53000 r-xp 00000000 fc:00 260228 /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so<br class="">
7f7fc8a53000-7f7fc8c52000 ---p 00006000 fc:00 260228 /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so<br class="">
7f7fc8c52000-7f7fc8c53000 r--p 00005000 fc:00 260228 /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so<br class="">
7f7fc8c53000-7f7fc8c54000 rw-p 00006000 fc:00 260228 /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so<br class="">
7f7fc8c54000-7f7fc8c5c000 r-xp 00000000 fc:00 260282 /usr/lib/perl/5.18.2/auto/Socket/Socket.so<br class="">
7f7fc8c5c000-7f7fc8e5c000 ---p 00008000 fc:00 260282 /usr/lib/perl/5.18.2/auto/Socket/Socket.so<br class="">
7f7fc8e5c000-7f7fc8e5e000 r--p 00008000 fc:00 260282 /usr/lib/perl/5.18.2/auto/Socket/Socket.so<br class="">
7f7fc8e5e000-7f7fc8e5f000 rw-p 0000a000 fc:00 260282 /usr/lib/perl/5.18.2/auto/Socket/Socket.so<br class="">
7f7fc8e5f000-7f7fc8e63000 r-xp 00000000 fc:00 260192 /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so<br class="">
7f7fc8e63000-7f7fc9062000 ---p 00004000 fc:00 260192 /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so<br class="">
7f7fc9062000-7f7fc9063000 r--p 00003000 fc:00 260192 /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so<br class="">
7f7fc9063000-7f7fc9064000 rw-p 00004000 fc:00 260192 /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so<br class="">
7f7fc9064000-7f7fc9066000 r-xp 00000000 fc:00 260176 /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so<br class="">
7f7fc9066000-7f7fc9265000 ---p 00002000 fc:00 260176 /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so<br class="">
7f7fc9265000-7f7fc9266000 r--p 00001000 fc:00 260176 /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so<br class="">
7f7fc9266000-7f7fc9267000 rw-p 00002000 fc:00 260176 /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so<br class="">
7f7fc9267000-7f7fc927e000 r-xp 00000000 fc:00 395859 /lib/x86_64-linux-gnu/<a href="http://libresolv-2.19.so/" rel="noreferrer" target="_blank" class="">libresolv-2.19.so</a><br class="">
7f7fc927e000-7f7fc947e000 ---p 00017000 fc:00 395859 /lib/x86_64-linux-gnu/<a href="http://libresolv-2.19.so/" rel="noreferrer" target="_blank" class="">libresolv-2.19.so</a><br class="">
7f7fc947e000-7f7fc947f000 r--p 00017000 fc:00 395859 /lib/x86_64-linux-gnu/<a href="http://libresolv-2.19.so/" rel="noreferrer" target="_blank" class="">libresolv-2.19.so</a><br class="">
7f7fc947f000-7f7fc9480000 rw-p 00018000 fc:00 395859 /lib/x86_64-linux-gnu/<a href="http://libresolv-2.19.so/" rel="noreferrer" target="_blank" class="">libresolv-2.19.so</a><br class="">
7f7fc9480000-7f7fc9482000 rw-p 00000000 00:00 0<br class="">
7f7fc9482000-7f7fc9487000 r-xp 00000000 fc:00 395806 /lib/x86_64-linux-gnu/<a href="http://libnss_dns-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_dns-2.19.so</a><br class="">
7f7fc9487000-7f7fc9686000 ---p 00005000 fc:00 395806 /lib/x86_64-linux-gnu/<a href="http://libnss_dns-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_dns-2.19.so</a><br class="">
7f7fc9686000-7f7fc9687000 r--p 00004000 fc:00 395806 /lib/x86_64-linux-gnu/<a href="http://libnss_dns-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_dns-2.19.so</a><br class="">
7f7fc9687000-7f7fc9688000 rw-p 00005000 fc:00 395806 /lib/x86_64-linux-gnu/<a href="http://libnss_dns-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_dns-2.19.so</a><br class="">
7f7fc9688000-7f7fc968a000 r-xp 00000000 fc:00 395814 /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2<br class="">
7f7fc968a000-7f7fc9889000 ---p 00002000 fc:00 395814 /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2<br class="">
7f7fc9889000-7f7fc988a000 r--p 00001000 fc:00 395814 /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2<br class="">
7f7fc988a000-7f7fc988b000 rw-p 00002000 fc:00 395814 /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2<br class="">
7f7fc988b000-7f7fc9896000 r-xp 00000000 fc:00 395808 /lib/x86_64-linux-gnu/<a href="http://libnss_files-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_files-2.19.so</a><br class="">
7f7fc9896000-7f7fc9a95000 ---p 0000b000 fc:00 395808 /lib/x86_64-linux-gnu/<a href="http://libnss_files-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_files-2.19.so</a><br class="">
7f7fc9a95000-7f7fc9a96000 r--p 0000a000 fc:00 395808 /lib/x86_64-linux-gnu/<a href="http://libnss_files-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_files-2.19.so</a><br class="">
7f7fc9a96000-7f7fc9a97000 rw-p 0000b000 fc:00 395808 /lib/x86_64-linux-gnu/<a href="http://libnss_files-2.19.so/" rel="noreferrer" target="_blank" class="">libnss_files-2.19.so</a><br class="">
7f7fc9a97000-7f7fc9aad000 r-xp 00000000 fc:00 395760 /lib/x86_64-linux-gnu/libgcc_s.so.1<br class="">
7f7fc9aad000-7f7fc9cac000 ---p 00016000 fc:00 395760 /lib/x86_64-linux-gnu/libgcc_s.so.1<br class="">
7f7fc9cac000-7f7fc9cad000 rw-p 00015000 fc:00 395760 /lib/x86_64-linux-gnu/libgcc_s.so.1<br class="">
7f7fc9cad000-7f7fc9cae000 ---p 00000000 00:00 0<br class="">
7f7fc9cae000-7f7fca4ae000 rw-p 00000000 00:00 0<br class="">
7f7fca4ae000-7f7fca4c6000 r-xp 00000000 fc:00 395896 /lib/x86_64-linux-gnu/libz.so.1.2.8<br class="">
7f7fca4c6000-7f7fca6c5000 ---p 00018000 fc:00 395896 /lib/x86_64-linux-gnu/libz.so.1.2.8<br class="">
7f7fca6c5000-7f7fca6c6000 r--p 00017000 fc:00 395896 /lib/x86_64-linux-gnu/libz.so.1.2.8<br class="">
7f7fca6c6000-7f7fca6c7000 rw-p 00018000 fc:00 395896 /lib/x86_64-linux-gnu/libz.so.1.2.8<br class="">
7f7fca6c7000-7f7fca977000 r-xp 00000000 fc:00 183788 /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0<br class="">
7f7fca977000-7f7fcab77000 ---p 002b0000 fc:00 183788 /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0<br class="">
7f7fcab77000-7f7fcab7c000 r--p 002b0000 fc:00 183788 /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0<br class="">
7f7fcab7c000-7f7fcabfa000 rw-p 002b5000 fc:00 183788 /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0<br class="">
7f7fcabfa000-7f7fcabff000 rw-p 00000000 00:00 0<br class="">
7f7fcabff000-7f7fcac19000 r-xp 00000000 fc:00 183957 /usr/lib/perl5/auto/DBD/mysql/mysql.so<br class="">
7f7fcac19000-7f7fcae19000 ---p 0001a000 fc:00 183957 /usr/lib/perl5/auto/DBD/mysql/mysql.so<br class="">
7f7fcae19000-7f7fcae1b000 r--p 0001a000 fc:00 183957 /usr/lib/perl5/auto/DBD/mysql/mysql.so<br class="">
7f7fcae1b000-7f7fcae1c000 rw-p 0001c000 fc:00 183957 /usr/lib/perl5/auto/DBD/mysql/mysql.so<br class="">
7f7fcae1c000-7f7fcae24000 r-xp 00000000 fc:00 260182 /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so<br class="">
7f7fcae24000-7f7fcb023000 ---p 00008000 fc:00 260182 /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so<br class="">
7f7fcb023000-7f7fcb024000 r--p 00007000 fc:00 260182 /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so<br class="">
7f7fcb024000-7f7fcb025000 rw-p 00008000 fc:00 260182 /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so<br class="">
7f7fcb025000-7f7fcb02c000 r-xp 00000000 fc:00 395861 /lib/x86_64-linux-gnu/<a href="http://librt-2.19.so/" rel="noreferrer" target="_blank" class="">librt-2.19.so</a><br class="">
7f7fcb02c000-7f7fcb22b000 ---p 00007000 fc:00 395861 /lib/x86_64-linux-gnu/<a href="http://librt-2.19.so/" rel="noreferrer" target="_blank" class="">librt-2.19.so</a><br class="">
7f7fcb22b000-7f7fcb22c000 r--p 00006000 fc:00 395861 /lib/x86_64-linux-gnu/<a href="http://librt-2.19.so/" rel="noreferrer" target="_blank" class="">librt-2.19.so</a><br class="">
7f7fcb22c000-7f7fcb22d000 rw-p 00007000 fc:00 395861 /lib/x86_64-linux-gnu/<a href="http://librt-2.19.so/" rel="noreferrer" target="_blank" class="">librt-2.19.so</a><br class="">
7f7fcb22d000-7f7fcb232000 r-xp 00000000 fc:00 260301 /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so<br class="">
7f7fcb232000-7f7fcb431000 ---p 00005000 fc:00 260301 /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so<br class="">
7f7fcb431000-7f7fcb432000 r--p 00004000 fc:00 260301 /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so<br class="">
7f7fcb432000-7f7fcb433000 rw-p 00005000 fc:00 260301 /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so<br class="">
7f7fcb433000-7f7fcb435000 r-xp 00000000 fc:00 260297 /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so<br class="">
7f7fcb435000-7f7fcb634000 ---p 00002000 fc:00 260297 /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so<br class="">
7f7fcb634000-7f7fcb635000 r--p 00001000 fc:00 260297 /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so<br class="">
7f7fcb635000-7f7fcb636000 rw-p 00002000 fc:00 260297 /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so<br class="">
7f7fcb636000-7f7fcb63b000 r-xp 00000000 fc:00 260251 /usr/lib/perl/5.18.2/auto/List/Util/Util.so<br class="">
7f7fcb63b000-7f7fcb83b000 ---p 00005000 fc:00 260251 /usr/lib/perl/5.18.2/auto/List/Util/Util.so<br class="">
7f7fcb83b000-7f7fcb83c000 r--p 00005000 fc:00 260251 /usr/lib/perl/5.18.2/auto/List/Util/Util.so<br class="">
7f7fcb83c000-7f7fcb83d000 rw-p 00006000 fc:00 260251 /usr/lib/perl/5.18.2/auto/List/Util/Util.so<br class="">
7f7fcb83d000-7f7fcb85b000 r-xp 00000000 fc:00 183894 /usr/lib/perl5/auto/DBI/DBI.so<br class="">
7f7fcb85b000-7f7fcba5a000 ---p 0001e000 fc:00 183894 /usr/lib/perl5/auto/DBI/DBI.so<br class="">
7f7fcba5a000-7f7fcba5b000 r--p 0001d000 fc:00 183894 /usr/lib/perl5/auto/DBI/DBI.so<br class="">
7f7fcba5b000-7f7fcba5c000 rw-p 0001e000 fc:00 183894 /usr/lib/perl5/auto/DBI/DBI.so<br class="">
7f7fcba5c000-7f7fcba60000 r-xp 00000000 fc:00 260245 /usr/lib/perl/5.18.2/auto/IO/IO.so<br class="">
7f7fcba60000-7f7fcbc5f000 ---p 00004000 fc:00 260245 /usr/lib/perl/5.18.2/auto/IO/IO.so<br class="">
7f7fcbc5f000-7f7fcbc60000 r--p 00003000 fc:00 260245 /usr/lib/perl/5.18.2/auto/IO/IO.so<br class="">
7f7fcbc60000-7f7fcbc61000 rw-p 00004000 fc:00 260245 /usr/lib/perl/5.18.2/auto/IO/IO.so<br class="">
7f7fcbc61000-7f7fcbc73000 r-xp 00000000 fc:00 260266 /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so<br class="">
7f7fcbc73000-7f7fcbe72000 ---p 00012000 fc:00 260266 /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so<br class="">
7f7fcbe72000-7f7fcbe75000 r--p 00011000 fc:00 260266 /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so<br class="">
7f7fcbe75000-7f7fcbe76000 rw-p 00014000 fc:00 260266 /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so<br class="">
7f7fcbe76000-7f7fcbe79000 r-xp 00000000 fc:00 260222 /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so<br class="">
7f7fcbe79000-7f7fcc079000 ---p 00003000 fc:00 260222 /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so<br class="">
7f7fcc079000-7f7fcc07a000 r--p 00003000 fc:00 260222 /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so<br class="">
7f7fcc07a000-7f7fcc07b000 rw-p 00004000 fc:00 260222 /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so<br class="">
7f7fcc07b000-7f7fcc75d000 r--p 00000000 fc:00 140924 /usr/lib/locale/locale-archive<br class="">
7f7fcc75d000-7f7fcc766000 r-xp 00000000 fc:00 395743 /lib/x86_64-linux-gnu/<a href="http://libcrypt-2.19.so/" rel="noreferrer" target="_blank" class="">libcrypt-2.19.so</a><br class="">
7f7fcc766000-7f7fcc966000 ---p 00009000 fc:00 395743 /lib/x86_64-linux-gnu/<a href="http://libcrypt-2.19.so/" rel="noreferrer" target="_blank" class="">libcrypt-2.19.so</a><br class="">
7f7fcc966000-7f7fcc967000 r--p 00009000 fc:00 395743 /lib/x86_64-linux-gnu/<a href="http://libcrypt-2.19.so/" rel="noreferrer" target="_blank" class="">libcrypt-2.19.so</a><br class="">
7f7fcc967000-7f7fcc968000 rw-p 0000a000 fc:00 395743 /lib/x86_64-linux-gnu/<a href="http://libcrypt-2.19.so/" rel="noreferrer" target="_blank" class="">libcrypt-2.19.so</a><br class="">
[2]+ Aborted (core dumped) perl <a href="http://tryit_crash.pl/" rel="noreferrer" target="_blank" class="">tryit_crash.pl</a> > tic.out<br class="">
<br class="">
<br class="">
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Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank" class="">Dev@ensembl.org</a><br class="">
Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" rel="noreferrer" target="_blank" class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="">
Ensembl Blog: <a href="http://www.ensembl.info/" rel="noreferrer" target="_blank" class="">http://www.ensembl.info/</a><br class="">
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_______________________________________________<br class="">Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank" class="">Dev@ensembl.org</a><br class="">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" target="_blank" class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="">Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank" class="">http://www.ensembl.info/</a><br class=""></div></blockquote></div><br class=""></div></div></div><br class="">_______________________________________________<br class="">
Dev mailing list <a href="mailto:Dev@ensembl.org" class="">Dev@ensembl.org</a><br class="">
Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" rel="noreferrer" target="_blank" class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="">
Ensembl Blog: <a href="http://www.ensembl.info/" rel="noreferrer" target="_blank" class="">http://www.ensembl.info/</a><br class="">
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_______________________________________________<br class="">Dev mailing list <a href="mailto:Dev@ensembl.org" class="">Dev@ensembl.org</a><br class="">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="">Ensembl Blog: <a href="http://www.ensembl.info/" class="">http://www.ensembl.info/</a><br class=""></div></blockquote></div><br class=""></div>_______________________________________________<br class="">Dev mailing list <a href="mailto:Dev@ensembl.org" class="">Dev@ensembl.org</a><br class="">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" class="">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="">Ensembl Blog: <a href="http://www.ensembl.info/" class="">http://www.ensembl.info/</a><br class=""></div></blockquote></div><br class=""></body></html>