<html><head><style>body{font-family:Helvetica,Arial;font-size:13px}</style></head><body style="word-wrap:break-word"><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">Hi Will, Ensembl folk,</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto"><br></div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">When annotating ExAC (yet again...), I found another issue with multi-allelics. The following variant:</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto"><br></div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">20<span class="Apple-tab-span" style="white-space:pre"> </span>31022441<span class="Apple-tab-span" style="white-space:pre"> </span>.<span class="Apple-tab-span" style="white-space:pre"> </span>AGG<span class="Apple-tab-span" style="white-space:pre"> </span>AGGG,AG,TGG,A</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto"><br></div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">only gets 3 alleles annotated (15 total annotations, with 5 overlapping transcripts), and the final allele (AGG->A) appears to not get annotated.</div><div><br></div>Seems to persist all the way up to v85. Any ideas why this might be the case?<div><br></div><div>Thanks!<br><div class="bloop_sign" id="bloop_sign_1470200977055292160"><div style="font-family:helvetica,arial;font-size:13px">-Konrad</div></div></div></body></html>