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<p>Hi, I'm using VEP with a downloaded cache, and it seems that VEP is annotating some non-hgnc gene symbols or at least outdated symbols. I need a gene list including all possible genes that VEP could output for a downstream application. Is there a definitive
list of genes that VEP could output? Otherwise, what source is used to build the VEP cache?</p>
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<p>Some of the superceded gene symbols it's outputting, using the Ensembl 83 refseq cache, are:</p>
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<li>GLTPD1<br>
</li><li>C1orf86<br>
</li><li>C7orf63<br>
</li><li>PCNXL3</li></ul>
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Thanks!
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