<div dir="ltr">Sure, done!<div><br></div><div>Will</div></div><div class="gmail_extra"><br><div class="gmail_quote">On 3 August 2016 at 18:13, Konrad Karczewski <span dir="ltr"><<a href="mailto:konradk@broadinstitute.org" target="_blank">konradk@broadinstitute.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word"><div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">Hi Will,</div><div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto"><br></div><div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">Great, thanks! Do you mind patching 81 as well? Would like to do some comparisons in ExAC.</div><div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto"><br></div> Thanks!<span class="HOEnZb"><font color="#888888"><br> <div><div style="font-family:helvetica,arial;font-size:13px">-Konrad</div></div></font></span><div><div class="h5"> <br><p>On August 3, 2016 at 6:03:09 AM, Will McLaren (<a href="mailto:wm2@ebi.ac.uk" target="_blank">wm2@ebi.ac.uk</a>) wrote:</p> <blockquote type="cite"><span><div><div></div><div>





<div dir="ltr">Thanks Konrad, this should be fixed on 85 now. I can
patch previous releases too if you're using an older one?
<div><br></div>
<div>AGG->AG and AGG->A both resolve to a deletion, and
internally things were being keyed on the resolved ALT, which in
both cases was "-" even though they were deleting different
things...<br>
<div><br></div>
<div>Will</div>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On 3 August 2016 at 06:15, Konrad
Karczewski <span dir="ltr"><<a href="mailto:konradk@broadinstitute.org" target="_blank">konradk@broadinstitute.org</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">
<div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">
Hi Will, Ensembl folk,</div>
<div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">
<br></div>
<div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">
When annotating ExAC (yet again...), I found another issue with
multi-allelics. The following variant:</div>
<div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">
<br></div>
<div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">
20 31022441 . AGG AGGG,AG,TGG,A</div>
<div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">
<br></div>
<div style="font-family:Helvetica,Arial;font-size:13px;color:rgba(0,0,0,1.0);margin:0px;line-height:auto">
only gets 3 alleles annotated (15 total annotations, with 5
overlapping transcripts), and the final allele (AGG->A) appears
to not get annotated.</div>
<div><br></div>
Seems to persist all the way up to v85. Any ideas why this might be
the case?
<div><br></div>
<div>Thanks!<span><font color="#888888"><br></font></span>
<div>
<div style="font-family:helvetica,arial;font-size:13px">
<span><font color="#888888">-Konrad</font></span></div>
</div>
</div>
</div>
<br>
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</div>
<br></div>


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