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Hi Matiss,<br>
<br>
In addition to Kieron's reply there are a number of other high
quality sources of interaction and pathway data.<br>
<br>
InnateDB (<a class="moz-txt-link-freetext" href="http://innatedb.ca">http://innatedb.ca</a>)<br>
IntAct (<a class="moz-txt-link-freetext" href="http://www.ebi.ac.uk/intact/site/index.jsf">http://www.ebi.ac.uk/intact/site/index.jsf</a>)<br>
Bind (<a class="moz-txt-link-freetext" href="http://bond.unleashedinformatics.com/Action">http://bond.unleashedinformatics.com/Action</a>?)<br>
Mint (<a class="moz-txt-link-freetext" href="http://mint.bio.uniroma2.it/mint">http://mint.bio.uniroma2.it/mint</a>)<br>
<br>
As well EBI maintains a registry of programatically accessible
interaction data in PSICQUIC registry (
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<a class="moz-txt-link-abbreviated" href="http://www.ebi.ac.uk/Tools/webservices/psicquic/view">www.ebi.ac.uk/Tools/webservices/psicquic/view</a>), unfortunately this
is still currently offline after a weekend data centre shutdown on
campus. It should be back online soon.<br>
<br>
<div class="moz-cite-prefix">On 31/08/16 09:54, Kieron Taylor wrote:<br>
</div>
<blockquote
cite="mid:11431717-2E13-41A1-99CD-DFFCF87050F2@ebi.ac.uk"
type="cite">
<pre wrap="">Hi Matiss,
You could try <a class="moz-txt-link-freetext" href="http://www.genome.jp/kegg/rest/keggapi.html">http://www.genome.jp/kegg/rest/keggapi.html</a>
We don't have a direct relationship with KEGG at the moment, so take the links with a little caution.
Kieron
Kieron Taylor PhD.
Ensembl Developer
EMBL, European Bioinformatics Institute
</pre>
<blockquote type="cite">
<pre wrap="">On 3 Aug 2016, at 11:58, Matiss Ozols <a class="moz-txt-link-rfc2396E" href="mailto:matiss.ozols@manchester.ac.uk"><matiss.ozols@manchester.ac.uk></a> wrote:
Dear all,
I am using many Ensembl tools, however I am wondering how I can retrieve an information about pathways each gene is involved in? I found KEGG pathways but not sure if they have API.
I am using Python programming and would be great to have an API that retrieves this info for each of genes.
I have about 500 genes that I need to know what pathways they are involved in.
Hope you can help,
Best regards,
Matiss
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<pre wrap="">
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</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Matthew Laird - Ensembl Core Developer
The European Bioinformatics Institute (EMBL-EBI)
Wellcome Genome Campus
Hinxton, Cambridge
CB10 1SD, United Kingdom
Tel: +44-(0)1223-494274
Fax: +44-(0)1223-494468
<a class="moz-txt-link-freetext" href="http://www.ebi.ac.uk/">http://www.ebi.ac.uk/</a>
<a class="moz-txt-link-freetext" href="http://www.ensembl.org/">http://www.ensembl.org/</a></pre>
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