<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Dear Julien,<div class=""><br class=""></div><div class="">Our ensembl gene mart via the R package seems to be working fine for me this morning:</div><div class=""><br class=""></div><div class="">> mart <- useMart("ENSEMBL_MART_ENSEMBL",dataset="hsapiens_gene_ensembl",host="<a href="http://www.ensembl.org" class="">www.ensembl.org</a>")</div><div class=""><div class="">> getBM(attributes=c('ensembl_gene_id','ensembl_transcript_id','description'),filters = 'ensembl_gene_id', values = 'ENSG00000252303', mart = mart)</div><div class=""> ensembl_gene_id ensembl_transcript_id description</div><div class="">1 ENSG00000252303 ENST00000516494 RNA, U6 small nuclear 280, pseudogene [Source:HGNC Symbol;Acc:HGNC:47243]</div></div><div class=""><br class=""></div><div class="">Could you please let me know:</div><blockquote style="margin: 0 0 0 40px; border: none; padding: 0px;" class=""><div class="">1) The mart that you are using</div><div class="">2) The ensembl website that you are pointing to</div><div class="">3) The error that you are getting</div></blockquote><div class=""><br class=""></div><div class="">Thanks a lot,</div><div class="">Regards,</div><div class="">Thomas</div><div class=""><div><blockquote type="cite" class=""><div class="">On 31 Aug 2016, at 07:51, Julien Roux <<a href="mailto:julien.roux@unil.ch" class="">julien.roux@unil.ch</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Dear Ensembl team,<br class=""><br class="">Thanks for bringing the website up, it was missed a lot! ;)<br class=""><br class="">This morning I have trouble to connect to the database via the R package BiomaRt (the web version of biomart works just fine). Is this related to the downtime?<br class=""><br class="">Best,<br class=""><br class="">Julien<br class=""><br class="">-- <br class="">Julien Roux<br class="">Department of Ecology and Evolution, University of Lausanne, Switzerland<br class=""><a href="http://www.unil.ch/dee/home/menuinst/people/post-docs--associates/dr-julien-roux.html" class="">http://www.unil.ch/dee/home/menuinst/people/post-docs--associates/dr-julien-roux.html</a><br class="">Tel: +41 78 700 2931<br class="">Twitter: @_julien_roux<br class=""><br class=""><br class="">_______________________________________________<br class="">Dev mailing list Dev@ensembl.org<br class="">Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev<br class="">Ensembl Blog: http://www.ensembl.info/<br class=""></div></div></blockquote></div><br class=""><div class="">
<div class=""><div class="" style="orphans: 2; widows: 2;">--</div><div class="" style="orphans: 2; widows: 2;">Thomas Maurel<br class="">Bioinformatician - Ensembl Production Team<br class="">European Bioinformatics Institute (EMBL-EBI)<br class="">European Molecular Biology Laboratory<br class="">Wellcome Trust Genome Campus<br class="">Hinxton<br class="">Cambridge CB10 1SD<br class="">United Kingdom</div></div>
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