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Hi Karen,<br>
<br>
I normally use the following example to check the data is there:<br>
<a class="moz-txt-link-freetext" href="http://rest.ensembl.org/vep/human/id/rs699?content-type=application/json&dbNSFP=FATHMM_pred">http://rest.ensembl.org/vep/human/id/rs699?content-type=application/json&dbNSFP=FATHMM_pred</a><br>
<br>
However, this data is only available for GRCh38, so you would not be
able to get any results on the GRCh37 dedicated REST server.<br>
<br>
<br>
Cheers,<br>
mag<br>
<br>
<div class="moz-cite-prefix">On 11/11/2016 16:10, King, Karen wrote:<br>
</div>
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<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">Hi.
<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">Could
someone please provide a working example for curl using this
endpoint:<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><a
moz-do-not-send="true"
href="http://grch37.rest.ensembl.org/documentation/info/vep_region_post">http://grch37.rest.ensembl.org/documentation/info/vep_region_post</a><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">that
also returns a field from dbNSFP (Ex: LRT_pred)?<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">Below
are 3 attempted curl commands that have not returned the
dbNSFP data:<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">curl
-H "content-type:application/json" \<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">-H
"accept:application/json" \<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">--data
'{ "variants" : ["1 230845794 rs699 A G . . ."] }' \<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><a
moz-do-not-send="true"
href="http://grch37.rest.ensembl.org/vep/homo_sapiens/region?dbNSFP=LRT_pred">http://grch37.rest.ensembl.org/vep/homo_sapiens/region?dbNSFP=LRT_pred</a><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">curl
-H "content-type:application/json" \<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">-H
"accept:application/json" \<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">--data
'{ “dbNSFP” : “LRT_pred”, "variants" : ["1 230845794 rs699 A
G . . ."] }' \<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><a
moz-do-not-send="true"
href="http://grch37.rest.ensembl.org/vep/homo_sapiens/region">http://grch37.rest.ensembl.org/vep/homo_sapiens/region</a><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">curl
-H "content-type:application/json" \<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">-H
"accept:application/json" \<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">--data
'{ “dbNSFP” : [“LRT_pred”], "variants" : ["1 230845794 rs699
A G . . ."] }' \<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><a
moz-do-not-send="true"
href="http://grch37.rest.ensembl.org/vep/homo_sapiens/region">http://grch37.rest.ensembl.org/vep/homo_sapiens/region</a><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:black">Thanks!</span><span
style="font-size:7.5pt;font-family:"Arial","sans-serif";color:#7F7F7F"><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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