<div dir="ltr"><div dir="ltr" class="gmail_msg">Hi Matthieu,<div class="gmail_msg">Thanks for getting back to me. In the meantime I had Mateus explain to me that these are nucleotide substitution per site.</div><div class="gmail_msg"><br></div><div class="gmail_msg">Cheers,<br>Greg</div></div><br class="gmail_msg"><div class="gmail_quote gmail_msg"><div dir="ltr" class="gmail_msg">On Fri, Nov 25, 2016 at 4:39 PM Matthieu Muffato <<a href="mailto:muffato@ebi.ac.uk" class="gmail_msg" target="_blank">muffato@ebi.ac.uk</a>> wrote:<br class="gmail_msg"></div><blockquote class="gmail_quote gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Greg,<br class="gmail_msg">
<br class="gmail_msg">
The branch lengths come from phyloFit on aligned DNA sequences. They are<br class="gmail_msg">
substitution rates<br class="gmail_msg">
<br class="gmail_msg">
Matthieu<br class="gmail_msg">
<br class="gmail_msg">
On 21/11/16 14:47, Greg Slodkowicz wrote:<br class="gmail_msg">
> Hi all,<br class="gmail_msg">
> I was wondering if what unit are the branch lengths in the mammalian<br class="gmail_msg">
> species given<br class="gmail_msg">
> at <a href="https://github.com/Ensembl/ensembl-compara/blob/release/86/scripts/pipeline/species_tree.39mammals.branch_len.nw" rel="noreferrer" class="gmail_msg" target="_blank">https://github.com/Ensembl/ensembl-compara/blob/release/86/scripts/pipeline/species_tree.39mammals.branch_len.nw</a> ?<br class="gmail_msg">
><br class="gmail_msg">
> Many thanks,<br class="gmail_msg">
> Greg<br class="gmail_msg">
><br class="gmail_msg">
<br class="gmail_msg">
_______________________________________________<br class="gmail_msg">
Dev mailing list    <a href="mailto:Dev@ensembl.org" class="gmail_msg" target="_blank">Dev@ensembl.org</a><br class="gmail_msg">
Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev" rel="noreferrer" class="gmail_msg" target="_blank">http://lists.ensembl.org/mailman/listinfo/dev</a><br class="gmail_msg">
Ensembl Blog: <a href="http://www.ensembl.info/" rel="noreferrer" class="gmail_msg" target="_blank">http://www.ensembl.info/</a><br class="gmail_msg">
</blockquote></div></div>