<div dir="ltr">Hello,<div><br></div><div>You would need the core database for your species of interest. MySQL dump files are available from <a href="ftp://ftp.ensembl.org/pub/release-87/mysql/">ftp://ftp.ensembl.org/pub/release-87/mysql/</a>.</div><div><br></div><div>You could then point VEP to your MySQL server with the database on it with the --host, --port, --user and --pass flags.</div><div><br></div><div>Regards</div><div><br></div><div>Will McLaren</div><div>Ensembl Variation</div></div><div class="gmail_extra"><br><div class="gmail_quote">On 17 December 2016 at 02:08, csardas Gan <span dir="ltr"><<a href="mailto:csardas@gmail.com" target="_blank">csardas@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><p style="box-sizing:border-box;margin-bottom:16px;color:rgb(51,51,51);font-family:-apple-system,blinkmacsystemfont,"segoe ui",helvetica,arial,sans-serif,"apple color emoji","segoe ui emoji","segoe ui symbol";font-size:14px;margin-top:0px">hi all, </p><p style="box-sizing:border-box;margin-bottom:16px;color:rgb(51,51,51);font-family:-apple-system,blinkmacsystemfont,"segoe ui",helvetica,arial,sans-serif,"apple color emoji","segoe ui emoji","segoe ui symbol";font-size:14px;margin-top:0px">I tried to enable GO plugin in VEP</p><p style="box-sizing:border-box;margin-top:0px;margin-bottom:16px;color:rgb(51,51,51);font-family:-apple-system,blinkmacsystemfont,"segoe ui",helvetica,arial,sans-serif,"apple color emoji","segoe ui emoji","segoe ui symbol";font-size:14px">the plugin query database over internet<br style="box-sizing:border-box">that make the speed of processing variants slow down from 2500 vars/sec to 19 vars/sec</p><p style="box-sizing:border-box;margin-top:0px;color:rgb(51,51,51);font-family:-apple-system,blinkmacsystemfont,"segoe ui",helvetica,arial,sans-serif,"apple color emoji","segoe ui emoji","segoe ui symbol";font-size:14px;margin-bottom:0px">is it possible to query a local-installed database or cache?<br style="box-sizing:border-box">and which mysql database I should download?</p><p style="box-sizing:border-box;margin-top:0px;color:rgb(51,51,51);font-family:-apple-system,blinkmacsystemfont,"segoe ui",helvetica,arial,sans-serif,"apple color emoji","segoe ui emoji","segoe ui symbol";font-size:14px;margin-bottom:0px"><br></p></div>
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