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Hello Pankaj,<br>
<br>
Those are version numbers, they've been a part of Ensembl stable ids
since the start but not always displayed in every context, you can
read more about the rules for how they're incremented here:<br>
<br>
<a class="moz-txt-link-freetext" href="http://www.ensembl.org/info/genome/stable_ids/versions.html">http://www.ensembl.org/info/genome/stable_ids/versions.html</a><br>
<br>
Biomart does not accept versioned stable ids in queries, if you're
submitting a batch of stable ids to Biomart you must ensure they are
unversioned.<br>
<br>
Cheers.<br>
<br>
<div class="moz-cite-prefix">On 21/12/16 12:52, Pankaj Agarwal
wrote:<br>
</div>
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<p class="MsoNormal">Hi,<o:p></o:p></p>
<p class="MsoNormal">The Ensembl Transcript IDs for the GRCh38
version has periods at the end followed by a number. For ex:<o:p></o:p></p>
<p class="MsoNormal" style="background:white"><span
style="font-size:10.0pt;font-family:"Lucida
Console";color:#222222;border:none windowtext
1.0pt;padding:0in">ENST00000414852.1</span><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#222222"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span
style="font-size:10.0pt;font-family:"Lucida
Console";color:#222222;border:none windowtext
1.0pt;padding:0in">ENST00000390399.3<o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span
style="font-size:10.0pt;font-family:"Lucida
Console";color:#222222;border:none windowtext
1.0pt;padding:0in">ENST00000610439.4</span><span
style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#222222"><o:p></o:p></span></p>
<p class="MsoNormal">When I query these in biomart it does not
work. I have remove the period and the following number.<o:p></o:p></p>
<p class="MsoNormal">I was wondering why these were introduced,
what they mean, and how to get these to work with Biomart.<o:p></o:p></p>
<p class="MsoNormal">Thanks,<o:p></o:p></p>
<p class="MsoNormal">- Pankaj<o:p></o:p></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif"">-----------------------------<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif"">Pankaj
Agarwal, M.S<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif"">Bioinformatician<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif"">Data
Analyst<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif"">Applied
Therapeutics<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif"">Div.
of Surgical Sciences<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif"">Dept.
of Surgery<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif"">Duke
University<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif"">M:
919-244-6389<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif"">O:
919-681-2251<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:7.0pt;font-family:"Verdana","sans-serif""><a
moz-do-not-send="true" href="mailto:p.agarwal@duke.edu"><span
style="color:blue"><a class="moz-txt-link-abbreviated" href="mailto:p.agarwal@duke.edu">p.agarwal@duke.edu</a></span></a><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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