<html><head><meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body dir="auto"><div>Dear Matthew,</div><div id="AppleMailSignature">Thanks for the quick reply.</div><div id="AppleMailSignature">Looking forward for the next Ensembl release!</div><div id="AppleMailSignature">Best,<br><br>Matteo Accetturo </div><div><br>Il giorno 03 apr 2017, alle ore 16:30, Matthew Laird <<a href="mailto:lairdm@ebi.ac.uk">lairdm@ebi.ac.uk</a>> ha scritto:<br><br></div><blockquote type="cite"><div>
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Hello Matteo,<br>
<br>
You have indeed spotted a bug in the REST API, if the requested
overlap region is completely within the exon's start and end it
isn't currently returned. This bug is only occurring with exon
features.<br>
<br>
The fix will be available in Ensembl 89 released in May. In the
meantime a work around would be to either expand your overlap window
or for any gene/transcripts returned do a lookup using the expand
option to find any decedent exons.<br>
<br>
Cheers.<br>
<br>
<div class="moz-cite-prefix">On 03/04/17 14:20, Matteo Accetturo
wrote:<br>
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Dear Ensembl team,
<div class="">I am trying to retrieve the exon number with the <font style="text-decoration: none;" class=""><a moz-do-not-send="true" href="http://rest.ensembl.org/documentation/info/overlap_region" style="text-decoration: none;" class="">GET
overlap/region/:species/:region</a> </font>REST API
Endpoint, however the results are not always as expected. For
example:</div>
<div class=""><a moz-do-not-send="true" href="http://rest.ensembl.org/overlap/region/human/1:179564700-179564705?feature=gene;feature=exon;content-type=application/json" class="">http://rest.ensembl.org/overlap/region/human/1:179564700-179564705?feature=gene;feature=exon;content-type=application/json</a></div>
<div class="">should retrieve exon number 2, while it doesn’t
retrieve any exon.</div>
<div class="">Am I doing any mistake?</div>
<div class="">Thanks,</div>
<div class="">Matteo.</div>
<div class=""><br class="">
<div class="">
<div class="">###################</div>
Matteo Accetturo, Ph.D.<br class="">
Dipartimento dell’Emergenza e dei trapianti di organi<br class="">
Università degli Studi di Bari “A.Moro”<br class="">
Policlinico, Piazza G. Cesare 11<br class="">
70124 Bari<br class="">
T: +39 080 5478868<br class="">
<br class="">
<br class="">
</div>
<br class="">
</div>
<br>
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<br>
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