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To be more specific, why are these two files separate? Why not just have one FASTA file? I’ am asking this question because I’ am working with another individual on a python package for downloading/managing Ensembl data (<a href="https://github.com/hammerlab/pyensembl" class="">https://github.com/hammerlab/pyensembl</a>)
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<div class=""><a href="ftp://ftp.ensembl.org/pub/release-88/fasta/homo_sapiens/cdna//Homo_sapiens.GRCh38.cdna.all.fa.gz" class="">ftp://ftp.ensembl.org/pub/release-88/fasta/homo_sapiens/cdna//Homo_sapiens.GRCh38.cdna.all.fa.gz</a></div>
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<div class=""><a href="ftp://ftp.ensembl.org/pub/release-88/fasta/homo_sapiens/ncrna//Homo_sapiens.GRCh38.ncrna.fa.gz" class="">ftp://ftp.ensembl.org/pub/release-88/fasta/homo_sapiens/ncrna//Homo_sapiens.GRCh38.ncrna.fa.gz</a></div>
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<div class="">On May 5, 2017, at 13:06, Charles Joseph Murphy <<a href="mailto:chm2059@med.cornell.edu" class="">chm2059@med.cornell.edu</a>> wrote:</div>
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<div class="">Hi,<br class="">
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Just out of curiosity, why are the cDNA and ncRNA sequences in separate FASTA files? Is this due to each set of transcripts being produced via different computational pipelines?<br class="">
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Charlie<br class="">
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